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<!--
~ build_tempest.xml
-->
<project name="TempEst" default="build" basedir=".">
<description>
Build file for TempEst release versions.
</description>
<property name="JDK_SOURCE_VERSION" value="1.6"/>
<property name="JDK_TARGET_VERSION" value="1.6"/>
<!-- set global properties for this build -->
<property name="src" location="src"/>
<property name="build" location="build"/>
<property name="lib" location="lib"/>
<property name="dist" location="dist"/>
<path id="classpath">
<fileset dir="${lib}" includes="**/*.jar"/>
</path>
<property environment="env"/>
<target name="init">
<!-- Create the time stamp -->
<echo message="${ant.project.name}: ${ant.file}" />
<tstamp/>
<!-- Create the build directory structure used by compile -->
<mkdir dir="${build}"/>
<mkdir dir="${dist}"/>
</target>
<target name="clean">
<delete dir="${build}"/>
</target>
<target name="compile" depends="init">
<!-- Compile the java code from ${src} into ${build} -->
<javac source="${JDK_SOURCE_VERSION}" target="${JDK_TARGET_VERSION}" srcdir="${src}" destdir="${build}" classpathref="classpath">
<include name="dr/app/tempest/**"/>
<include name="dr/app/beauti/**"/>
<include name="dr/app/tools/**"/>
<include name="dr/app/util/**"/>
<include name="dr/evolution/io/**"/>
<include name="dr/evolution/datatype/**"/>
<include name="dr/evolution/sequence/**"/>
<include name="dr/evolution/alignment/**"/>
<include name="dr/evolution/tree/**"/>
<include name="dr/evolution/util/**"/>
<include name="dr/app/gui/**"/>
<include name="dr/matrix/**"/>
<include name="dr/stats/**"/>
<include name="dr/math/**"/>
<include name="dr/util/**"/>
<include name="org/virion/jam/**"/>
</javac>
</target>
<target name="dist" depends="compile" description="generate the jar file">
<!-- Create the distribution directory -->
<mkdir dir="${dist}"/>
<!-- Put everything in ${build} into the treestat.jar file -->
<jar jarfile="${dist}/tempest.jar">
<manifest>
<attribute name="Built-By" value="${user.name}"/>
<attribute name="Main-Class" value="dr.app.tempest.TempEstApp"/>
</manifest>
<fileset dir="${build}">
<include name="dr/app/tempest/**/*.class"/>
<include name="dr/app/beauti/**/*.class"/>
<include name="dr/app/tools/**/*.class"/>
<include name="dr/app/util/**/*.class"/>
<include name="dr/evolution/io/**/*.class"/>
<include name="dr/evolution/datatype/**/*.class"/>
<include name="dr/evolution/sequence/**/*.class"/>
<include name="dr/evolution/alignment/**/*.class"/>
<include name="dr/evolution/tree/**/*.class"/>
<include name="dr/evolution/util/**/*.class"/>
<include name="dr/app/gui/**/*.class"/>
<include name="dr/matrix/**/*.class"/>
<include name="dr/stats/**/*.class"/>
<include name="dr/math/**/*.class"/>
<include name="dr/util/**/*.class"/>
</fileset>
<fileset dir="">
<include name="images/*.png"/>
</fileset>
<fileset dir="${src}">
<include name="dr/app/tempest/**/*.png"/>
<include name="dr/app/gui/**/*.png"/>
<include name="org/virion/jam/**/*.png"/>
<include name="dr/gui/table/**/*.png"/>
</fileset>
<zipgroupfileset dir="${lib}" includes="**/jebl.jar"/>
<zipgroupfileset dir="${lib}" includes="**/jam.jar"/>
<zipgroupfileset dir="${lib}" includes="**/figtreepanel.jar"/>
</jar>
</target>
<property name="version" value="1.5.3" />
<property name="packaging_tools" value="packaging_tools" />
<property name="release_dir" value="release_tempest" />
<property name="name" value="TempEst" />
<property name="common_dir" value="${release_dir}/common" />
<property name="Mac_dir" value="${release_dir}/Mac" />
<property name="Linux_dir" value="${release_dir}/Linux" />
<property name="Windows_dir" value="${release_dir}/Windows" />
<property name="Mac_package_dir" value="${Mac_dir}/${name} v${version}" />
<property name="Linux_package_dir" value="${Linux_dir}/${name}_v${version}" />
<property name="Windows_package_dir" value="${Windows_dir}/${name} v${version}" />
<!-- Need to either install Launch4j under {BEAST workspace}/${release}
or install it in the default directory and change the location of launch4j.dir -->
<target name="windows" depends="dist" description="release Windows version of TempEst">
<delete dir="${Windows_package_dir}" />
<!-- Create the release directory -->
<mkdir dir="${Windows_package_dir}" />
<property name="launch4j.dir" location="${Windows_dir}/launch4j" />
<taskdef name="launch4j" classname="net.sf.launch4j.ant.Launch4jTask"
classpath="${launch4j.dir}/launch4j.jar :${launch4j.dir}/lib/xstream.jar" />
<copy file="${dist}/tempest.jar" todir="${Windows_package_dir}/lib"/>
<!--
<copy todir="${Windows_package_dir}/lib">
<fileset dir="${Windows_dir}/lib"/>
</copy>
-->
<copy file="${common_dir}/README.txt" todir="${Windows_package_dir}"/>
<launch4j configFile="${Windows_dir}/tempest_launch4j.xml"
jar="${dist}/tempest.jar"
outfile="${Windows_package_dir}/${name} v${version}.exe"
fileVersion="${version}.0"
txtFileVersion="${version}"
productVersion="${version}.0"
txtProductVersion="${version}"/>
<zip destfile="${release_dir}/${name} v${version}.zip">
<zipfileset dir="${Windows_package_dir}" prefix="${name} v${version}"/>
</zip>
<echo message="Windows version release is finished." />
</target>
<target name="linux" depends="dist" description="release Linux/Unix version of TempEst">
<delete dir="${Linux_package_dir}" />
<!-- Create the release directory -->
<mkdir dir="${Linux_package_dir}" />
<copy todir="${Linux_package_dir}/bin">
<fileset dir="${Linux_dir}/scripts"/>
</copy>
<chmod dir="${Linux_package_dir}/bin" perm="755" includes="**/**"/>
<copy file="${Linux_dir}/icons/tempest.png" todir="${Linux_package_dir}/images"/>
<copy file="${dist}/tempest.jar" todir="${Linux_package_dir}/lib"/>
<!-- no libraries to copy...
<copy todir="${Linux_package_dir}/lib">
<fileset dir="${Linux_dir}/lib"/>
</copy>
-->
<copy file="${common_dir}/README.txt" todir="${Linux_package_dir}"/>
<tar destfile="${release_dir}/${name}_v${version}.tgz" compression="gzip">
<tarfileset dir="${Linux_package_dir}" prefix="${name}_v${version}"/>
</tar>
<echo message="Linux/Unix version release is finished." />
</target>
<!-- this will only work on Andrew's computer -->
<property name="AppleSigner" value="Developer ID Application: Andrew Rambaut (9E4WXAQ6SE)" />
<target name="mac" depends="dist" description="release Mac version of Tempest">
<delete dir="${Mac_package_dir}" />
<!-- Create the release directory -->
<mkdir dir="${Mac_package_dir}" />
<copy file="${common_dir}/README.txt" todir="${Mac_package_dir}"/>
<taskdef name="jarbundler" classname="com.ultramixer.jarbundler.JarBundler" classpath="${packaging_tools}/mac/jarbundler-core-3.3.0.jar"/>
<!-- create a jar bundle for the mac -->
<jarbundler dir="${Mac_package_dir}"
name="${name} v${version}"
mainclass="dr.app.tempest.TempEstApp"
stubfile="${packaging_tools}/mac/universalJavaApplicationStub"
useJavaXKey="true"
icon="${Mac_dir}/icons/TempEst.icns"
jvmversion="1.6+"
arguments=""
vmoptions="-Xmx1024M"
version="${version}"
highresolutioncapable="true"
copyright="${name} v${version}, Copyright 2006-2018, Andrew Rambaut"
bundleid="tempest" >
<javaproperty name="apple.laf.useScreenMenuBar" value="true"/>
<jarfileset dir="${dist}">
<include name="**/tempest.jar"/>
</jarfileset>
</jarbundler>
<!-- code signing -->
<exec executable="codesign">
<arg value="--deep"/>
<arg value="-s"/>
<arg value="${AppleSigner}"/>
<arg value="-v"/>
<arg value="${Mac_package_dir}/${name} v${version}.app"/>
</exec>
<echo message="Building disk image." />
<!-- create disk image -->
<exec executable="/usr/bin/hdiutil">
<arg value="create"/>
<arg value="-ov"/>
<arg value="-srcfolder"/>
<arg value="${Mac_package_dir}"/>
<arg value="-volname"/>
<arg value="${name} v${version}"/>
<arg value="-imagekey"/>
<arg value="zlib-level=6"/>
<arg value="${release_dir}/${name} v${version}.dmg"/>
</exec>
<exec executable="codesign">
<arg value="-s"/>
<arg value="${AppleSigner}"/>
<arg value="-v"/>
<arg value="${release_dir}/${name} v${version}.dmg"/>
</exec>
<echo message="Mac version release is finished." />
</target>
<target name="build" depends="mac, windows, linux" description="build all the executables" />
</project>
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