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<project name="CoalGen" default="all" basedir=".">
<description>
Build file for CoalGen versions
$Id: build_release.xml,v 1.5 2006/09/09 18:16:17 rambaut Exp $
</description>
<!-- set global properties for this build -->
<property name="src" location="src"/>
<property name="build" location="build"/>
<property name="lib" location="lib"/>
<property name="dist" location="dist"/>
2
<property environment="env"/>
<target name="init">
<!-- Create the time stamp -->
<tstamp/>
<!-- Create the build directory structure used by compile -->
<mkdir dir="${build}"/>
<mkdir dir="${dist}"/>
</target>
<target name="all"
depends="compile-all"
description="Build all run-time stuff">
</target>
<target name="compile-all"
depends="compile-basic">
</target>
<path id="classpath">
<fileset dir="${lib}" includes="**/*.jar"/>
</path>
<target name="compile-basic" depends="init">
<!-- Compile the java code from ${src} into ${build} -->
<javac source="1.5" target="1.5" srcdir="${src}" destdir="${build}"
classpathref="classpath">
<include name="dr/app/coalgen/**"/>
<include name="dr/app/util/**"/>
<include name="dr/evolution/alignment/**"/>
<include name="dr/evolution/coalescent/**"/>
<include name="dr/evolution/colouring/**"/>
<include name="dr/evolution/datatype/**"/>
<include name="dr/evolution/distance/**"/>
<include name="dr/evolution/io/**"/>
<include name="dr/evolution/parsimony/**"/>
<include name="dr/evolution/sequence/**"/>
<include name="dr/evolution/tree/**"/>
<include name="dr/evolution/util/**"/>
<include name="dr/evoxml/**"/>
<include name="dr/gui/table/**"/>
<include name="dr/inference/trace/**"/>
<include name="dr/math/**"/>
<include name="dr/matrix/**"/>
<include name="dr/stats/**"/>
<include name="dr/util/**"/>
<include name="dr/xml/**"/>
</javac>
</target>
<target name="dist" depends="compile-all"
description="generate the distribution">
<!-- Create the distribution directory -->
<mkdir dir="${dist}"/>
<!-- Put everything in ${build} into the treestat.jar file -->
<jar jarfile="${dist}/coalgen.jar">
<manifest>
<attribute name="Built-By" value="${user.name}"/>
<attribute name="Main-Class" value="dr.app.coalgen.CoalGenApp"/>
</manifest>
<fileset dir="${build}">
<include name="dr/app/coalgen/**/*.class"/>
<include name="dr/app/beauti/**/*.class"/>
<include name="dr/app/gui/**/*.class"/>
<include name="dr/app/util/**/*.class"/>
<include name="dr/evolution/alignment/**/*.class"/>
<include name="dr/evolution/coalescent/**/*.class"/>
<include name="dr/evolution/colouring/**/*.class"/>
<include name="dr/evolution/datatype/**/*.class"/>
<include name="dr/evolution/distance/**/*.class"/>
<include name="dr/evolution/io/**/*.class"/>
<include name="dr/evolution/parsimony/**/*.class"/>
<include name="dr/evolution/sequence/**/*.class"/>
<include name="dr/evolution/tree/**/*.class"/>
<include name="dr/evolution/util/**/*.class"/>
<include name="dr/evoxml/**/*.class"/>
<include name="dr/gui/table/**/*.class"/>
<include name="dr/inference/trace/**/*.class"/>
<include name="dr/math/**/*.class"/>
<include name="dr/matrix/**/*.class"/>
<include name="dr/stats/**/*.class"/>
<include name="dr/util/**/*.class"/>
<include name="dr/xml/**/*.class"/>
</fileset>
<fileset dir="">
<include name="images/*.png"/>
</fileset>
<fileset dir="${src}">
<include name="dr/**/*.png"/>
</fileset>
<zipgroupfileset dir="${lib}" includes="**/jebl.jar"/>
<zipgroupfileset dir="${lib}" includes="**/jam.jar"/>
<zipgroupfileset dir="${lib}" includes="**/commons-math-2.2.jar"/>
</jar>
</target>
</project>
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