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Source: beast2-mcmc
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Olivier Sallou <osallou@debian.org>,
Pierre Gruet <pgtdebian@free.fr>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
javahelper,
ant,
ant-optional,
default-jdk,
libjam-java,
libhmsbeagle-java,
libcolt-free-java,
libfest-util-java,
libantlr4-runtime-java,
junit4,
texlive-latex-base,
texlive-latex-extra
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/beast2-mcmc
Vcs-Git: https://salsa.debian.org/med-team/beast2-mcmc.git
Homepage: https://www.beast2.org
Rules-Requires-Root: no
Package: beast2-mcmc
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends},
libhmsbeagle-java,
libjam-java,
libcolt-free-java,
libantlr4-runtime-java,
${java:Depends},
default-jre | java9-runtime
Suggests: beast2-mcmc-doc
Description: Bayesian MCMC phylogenetic inference
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This is no new upstream version of beast-mcmc (1.x) but rather a rewritten
version.
Package: beast2-mcmc-examples
Architecture: all
Section: doc
Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: beast2-mcmc
Multi-Arch: foreign
Description: Bayesian MCMC phylogenetic inference - example data
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This package contains the example data.
Package: beast2-mcmc-doc
Architecture: all
Section: doc
Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: beast2-mcmc
Multi-Arch: foreign
Description: Bayesian MCMC phylogenetic inference - documentation
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
This package contains the documentation.
|
