1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
|
## BEDOPS v2.4.41: high-performance genomic feature operations ##
[](https://github.com/bedops/bedops/actions/workflows/main.yml) [](https://github.com/bedops/bedops/stargazers) [](https://github.com/bedops/bedops/blob/master/LICENSE) [](https://readthedocs.org/projects/bedops/?badge=latest)
<!-- <img src="http://bedops.readthedocs.io/en/latest/_static/logo_with_label_v2.png" align="right" style="max-width:33%" /> -->
### About ###
**BEDOPS v2.4.41** is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.
The <a href="https://bedops.readthedocs.io/en/latest/content/overview.html#overview">overview</a> section of the **BEDOPS v2.4.41** documentation summarizes the toolkit, functionality and performance enhancements. The <a href="https://bedops.readthedocs.io/en/latest/index.html#reference">reference</a> table offers documentation for all applications and scripts.
### Downloads ###
<table width="100%">
<tr>
<th width="33%" align="left">
Linux
</th>
<th width="33%" align="left">
Mac OS X
</th>
<th width="34%" align="left">
Source code
</th>
</tr>
<tr>
<td valign="top">
<ul style="list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;">
<li><a href="https://github.com/bedops/bedops/releases/download/v2.4.41/bedops_linux_x86_64-v2.4.41.tar.bz2">x86-64 (64-bit)</a> binaries</li>
<li><a href="http://bedops.readthedocs.io/en/latest/content/installation.html#linux">Installation instructions</a> for Linux hosts</li>
</ul>
</td>
<td valign="top">
<ul style="list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;">
<li><a href="https://github.com/bedops/bedops/releases/download/v2.4.41/BEDOPS.2.4.41.pkg.zip">Intel/Rosetta (64-bit, 10.10-11.4)</a> installer package</li>
<li><a href="http://bedops.readthedocs.io/en/latest/content/installation.html#mac-os-x">Installation instructions</a> for Mac OS X hosts</li>
</ul>
</td>
<td valign="top">
<ul style="list-style-type:square; font-size:smaller; margin-left:0; margin-right:0px; padding-right:0px; padding-left:20px;">
<li><a href="https://github.com/bedops/bedops/archive/v2.4.41.tar.gz">Source code</a> (tar.gz)</li>
<li><a href="https://github.com/bedops/bedops/archive/v2.4.41.zip">Source code</a> (zip)</li>
<li><a href="http://bedops.readthedocs.io/en/latest/content/installation.html#installation-via-source-code">Compilation instructions</a></li>
</ul>
</td>
</tr>
</table>
### Documentation ###
Complete documentation for **BEDOPS v2.4.41** tools is available at: <a href="https://bedops.readthedocs.io/en/latest/index.html">https://bedops.readthedocs.io/</a>
### Citation ###
If you use **BEDOPS v2.4.41** in your research, please cite the following manuscript:
> Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.
> [**BEDOPS: high-performance genomic feature operations**
> *Bioinformatics* (2012) 28 (14): 1919-1920.] (http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract)
### Copyright ###
> Copyright (C) 2011-2022 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds
>
> Source code, documentation and media assets released under <a href="https://github.com/bedops/bedops/blob/master/LICENSE">GNU Public License Version 2</a> (GPL v2).
|
