File: usage-examples.rst

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Usage examples
==============

The following examples demonstrate the use of BEDOPS in analyzing genomic data. Here, we provide source code and snippets of data to demonstrate "real-world" examples based on daily usage of these tools in the `Stamatoyannopoulos <http://www.gs.washington.edu/faculty/stamj.htm>`_ lab.

.. toctree::

   usage-examples/snp-visualization
   usage-examples/master-list
   usage-examples/distance-frequencies
   usage-examples/snps-within-dhses
   usage-examples/smoothing-tags
   usage-examples/starchcluster
   usage-examples/multiple-inputs