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/*
Author: Scott Kuehn, Shane Neph
Date: Thu Nov 8 13:31:09 PST 2007
*/
//
// BEDOPS
// Copyright (C) 2011-2022 Shane Neph, Scott Kuehn and Alex Reynolds
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with this program; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
//
#ifndef ECHO_MAP_BED_VISITOR_HPP
#define ECHO_MAP_BED_VISITOR_HPP
#include <set>
#include "data/bed/BedCompare.hpp"
namespace Visitors {
namespace BedSpecific { // use other/EchoMapVisitor.hpp for numeric types
template <
typename Process,
typename BaseVisitor
>
struct EchoMapBed : BaseVisitor {
typedef BaseVisitor BaseClass;
typedef Process ProcessType;
typedef typename BaseVisitor::RefType RefType;
typedef typename BaseVisitor::MapType MapType;
explicit EchoMapBed(const ProcessType& pt = ProcessType()) : pt_(pt)
{ /* */ }
inline void Add(MapType* t) {
win_.insert(t);
}
inline void Delete(MapType* t) {
win_.erase(t);
}
inline void DoneReference() {
pt_.operator()(win_.begin(), win_.end());
}
virtual ~EchoMapBed() { }
private:
typedef std::set< MapType*, Bed::GenomicRestAddressCompare<MapType, MapType> > SType; // consistent w/sort-bed
ProcessType pt_;
SType win_;
};
} // namespace BedSpecific
} // namespace Visitors
#endif // ECHO_MAP_BED_VISITOR_HPP
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