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/*
Author: Scott Kuehn, Shane Neph
Date: Wed Sep 5 09:33:15 PDT 2007
*/
//
// BEDOPS
// Copyright (C) 2011-2022 Shane Neph, Scott Kuehn and Alex Reynolds
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with this program; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
//
#ifndef OVR_UNIQUE_FRACT_VISITOR_HPP
#define OVR_UNIQUE_FRACT_VISITOR_HPP
#include "algorithm/visitors/bed/OvrUniqueVisitor.hpp"
#include "algorithm/visitors/helpers/ProcessVisitorRow.hpp"
namespace Visitors {
namespace BedSpecific {
template <
typename Process,
typename BaseVisitor
>
struct OvrUniqueFract : OvrUnique<Visitors::Helpers::Keep<double>, BaseVisitor> {
typedef OvrUnique<Visitors::Helpers::Keep<double>, BaseVisitor> BaseClass;
typedef Process ProcessType;
OvrUniqueFract(const ProcessType& pt = ProcessType()) : BaseClass(Visitors::Helpers::Keep<double>()), prt_(pt)
{ /* */ }
// Just give the fraction of refItem_'s bases covered
inline void DoneReference() {
BaseClass::DoneReference();
prt_.operator()(BaseClass::pt_.value_ / BaseClass::refItem_->length());
}
virtual ~OvrUniqueFract() { /* */ }
protected:
ProcessType prt_;
};
} // namespace BedSpecific
} // namespace Visitors
#endif // OVR_UNIQUE_FRACT_VISITOR_HPP
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