1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521
|
/*
Author: Shane Neph
Date: Thu Nov 24 20:16:29 PST 2016
*/
//
// BEDOPS
// Copyright (C) 2011-2016 Shane Neph, Scott Kuehn and Alex Reynolds
//
// This program is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License along
// with this program; if not, write to the Free Software Foundation, Inc.,
// 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#ifndef UTILS_SIMPLE_CHARARRAY_MEM
#define UTILS_SIMPLE_CHARARRAY_MEM
#include <cstring>
#include <exception>
#include <functional>
#include <limits>
#include <list>
#include <map>
#include <memory>
#include <set>
#include <utility>
#include "utility/BitMonitor.hpp"
namespace Ext {
template <std::size_t Sz>
struct PooledCharMemory2 {
PooledCharMemory2() : _curr(new MemChunk()), _cache(nullptr)
{
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
}
inline std::size_t
nblocks() const { return _blocks.size(); }
inline char*
construct(char const* val)
{
auto p = _curr->add(val);
if ( p )
return p;
/* current memory block is full */
if ( _cache ) {
_cache->clear();
_curr = _cache;
_cache = nullptr;
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
} else {
for ( auto& i : _blocks ) {
/* ensure no current block can accept val
before adding another MemChunk
*/
if ( i != _curr ) {
auto q = i->add(val);
if ( q ) {
_curr = i;
return q;
}
}
} // for
if ( std::strlen(val) > Sz )
throw std::logic_error("Cannot store a string that large in PooledCharMemory2<Sz>");
_curr = new MemChunk();
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
}
return _curr->add(val);
}
inline void
release(char* b)
{
if ( 1 == _blockstarts.size() )
_curr->remove(b);
else { // possible Chunk removal
auto iter = _blockstarts.begin();
MemChunk* m;
if ( _blockstarts.size() < 10 ) {
auto miter = _r.begin();
while ( *iter > b ) { ++iter; ++miter; }
m = miter->second;
} else {
iter = _blockstarts.lower_bound(b);
m = _r[*iter];
}
m->remove(b);
if ( m->empty() ) {
_blocks.erase(m);
_blockstarts.erase(iter);
_r.erase(*iter);
if ( !_cache )
_cache = m;
else
delete m;
if ( m == _curr )
_curr = *(_blocks.begin()); // important if we drop back to 1 block
}
}
}
~PooledCharMemory2()
{
for ( auto b : _blocks )
delete b;
if ( _cache )
delete _cache;
}
private:
template <std::size_t nelements>
struct CharChunk {
static constexpr std::size_t npos = std::numeric_limits<std::size_t>::max();
CharChunk() : _cc(0), _cntr(0), _data{} /*, _tracker(nelements), _dirty(nelements)*/
{
_data[nelements] = '\0';
/* leave _open empty until we've exhausted first pass of nelements */
}
inline bool
empty() const
{
return _cntr == 0;
}
inline char*
add(char const* c)
{
/* not protecting against c == nullptr in private, nested class */
if ( _cc == nelements ) {
auto a = find_open(c);
if ( a )
++_cntr;
return a;
}
std::size_t i = 0, start = _cc;
bool ok = false;
while ( start < nelements ) {
_data[start++] = c[i];
if ( c[i++] == '\0' ) {
ok = true;
break;
}
} // while
if ( start == nelements && c[i] == '\0' ) {
_data[start] = '\0'; // _data has nelements+1
ok = true;
}
if ( ok ) {
std::swap(start, _cc);
++_cntr;
_tracker.set(start);
return _data+start;
}
auto a = find_open(c);
if ( a )
++_cntr;
return a;
}
inline void
remove(char const* c)
{
_dirty.set(c - _data);
_tracker.unset(c - _data);
--_cntr;
}
inline void
clear()
{
_cntr = 0;
_cc = 0;
_data[nelements] = '\0';
_tracker.unset_all();
_dirty.unset_all();
_open.clear();
}
private:
char*
find_open(char const* c)
{
std::size_t need = std::strlen(c);
auto nxt = _open.lower_bound(need);
if ( nxt != _open.end() ) {
std::strcpy(_data+nxt->second, c);
std::size_t newlength = (nxt->first-need);
if ( newlength > 1 ) { // if == 1, can only hold '\0'
_open.insert(std::make_pair(newlength-1, nxt->second+need+1));
_dirty.set(nxt->second+need+1);
}
_dirty.unset(nxt->second);
_tracker.set(nxt->second);
_open.erase(nxt);
return _data+nxt->second;
}
std::size_t f = _dirty.find_first_set(), f2 = 0, g;
while ( f != _dirty.npos ) {
g = _tracker.next_set(f);
if ( g == _tracker.npos )
g = nelements;
f2 = f;
while ( (f2 = _dirty.next_set(f2)) < g ) {
if ( f2 == _dirty.npos )
break;
_dirty.unset(f2);
} // while
if ( g-f > need ) {
std::strcpy(_data+f, c);
_dirty.unset(f);
_dirty.set(f+need);
_tracker.set(f);
return _data+f;
}
if ( _open.size()<MAXLOOKUP && (g-f)>1 )
_open.insert(std::make_pair(g-f-1, f));
else if ( _open.size() == MAXLOOKUP && (g-f)>(_open.begin()->first) ) {
_open.insert(std::make_pair(g-f-1, f));
_open.erase(_open.begin());
}
f = f2;
} // while
return nullptr;
}
friend struct PooledCharMemory2<nelements>;
static constexpr std::size_t MAXLOOKUP = 100;
std::size_t _cc;
std::size_t _cntr;
char _data[nelements+1];
BSet<nelements> _tracker, _dirty;
std::multimap<std::size_t, std::size_t> _open; // size, position
};
typedef CharChunk<Sz> MemChunk;
MemChunk* _curr;
MemChunk* _cache;
// Important to remember that _blocks, _blockstarts, _r all have the same #elements
std::set<MemChunk*, std::greater<MemChunk*>> _blocks;
std::set<char*, std::greater<char*>> _blockstarts;
std::map<char*, MemChunk*, std::greater<char*>> _r;
};
/*********************************************************
*********************************************************/
template <std::size_t Sz>
struct PooledCharMemory {
PooledCharMemory() : _curr(new MemChunk()), _cache(nullptr)
{
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
}
inline std::size_t
nblocks() const { return _blocks.size(); }
inline char*
construct(char const* val)
{
auto p = _curr->add(val);
if ( p )
return p;
/* current memory block is full */
if ( _cache ) {
_cache->clear();
_curr = _cache;
_cache = nullptr;
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
} else {
for ( auto& i : _blocks ) {
/* ensure no current block can accept val
before adding another MemChunk
*/
if ( i != _curr ) {
auto q = i->add(val);
if ( q ) {
_curr = i;
return q;
}
}
} // for
if ( std::strlen(val) > Sz )
throw std::logic_error("Cannot store a string that large in PooledCharMemory<Sz>");
_curr = new MemChunk();
_blocks.insert(_curr);
_blockstarts.insert(_curr->_data);
_r.insert(std::make_pair(_curr->_data, _curr));
}
auto r = _curr->add(val);
return r;
}
inline void
release(char* b)
{
if ( 1 == _blockstarts.size() )
_curr->remove(b);
else { // possible Chunk removal
auto iter = _blockstarts.begin();
MemChunk* m;
if ( _blockstarts.size() < 10 ) {
auto miter = _r.begin();
while ( *iter > b ) { ++iter; ++miter; }
m = miter->second;
} else {
iter = _blockstarts.lower_bound(b);
m = _r[*iter];
}
m->remove(b);
if ( m->empty() ) {
_blocks.erase(m);
_blockstarts.erase(iter);
_r.erase(*iter);
if ( !_cache )
_cache = m;
else
delete m;
if ( m == _curr )
_curr = *(_blocks.begin()); // important if we drop back to 1 block
}
}
}
~PooledCharMemory()
{
for ( auto b : _blocks )
delete b;
if ( _cache )
delete _cache;
}
private:
template <std::size_t nelements>
struct CharChunk {
static constexpr std::size_t npos = std::numeric_limits<std::size_t>::max();
CharChunk() : _cc(0), _cntr(0), _data{}
{
_data[nelements] = '\0';
/* leave _open empty until we've exhausted first pass of nelements */
}
inline bool
empty() const
{
return _cntr == 0;
}
inline char*
add(char const* c)
{
/* not protecting against c == nullptr in private, nested class */
if ( _cc == nelements ) {
auto a = find_open(c);
if ( a ) {
++_cntr;
_tracker.set(a - _data);
}
return a;
}
std::size_t i = 0, start = _cc;
bool ok = false;
while ( start < nelements ) {
_data[start++] = c[i];
if ( c[i++] == '\0' ) {
ok = true;
break;
}
} // while
if ( start == nelements && c[i] == '\0' ) {
_data[start] = '\0'; // _data has nelements+1
ok = true;
}
if ( ok ) {
std::swap(start, _cc);
++_cntr;
_tracker.set(start);
return _data+start;
}
auto a = find_open(c);
if ( a ) {
++_cntr;
_tracker.set(a - _data);
}
return a;
}
inline void
remove(char const* c)
{
_dirty.push_back(c - _data);
_tracker.unset(c - _data);
--_cntr;
}
inline void
clear()
{
_cntr = 0;
_cc = 0;
_open.clear(); // leave empty until we've exhausted first pass of nelements
_dirty.clear();
_tracker.unset_all();
_data[nelements] = '\0';
}
private:
inline char*
find_open(char const* c)
{
std::size_t sz = std::strlen(c);
auto nxt = _open.lower_bound(sz);
if ( nxt != _open.end() ) {
std::strcpy(_data+nxt->second, c);
std::size_t newlength = (nxt->first-sz);
if ( newlength > 1 ) // if == 1, can only hold '\0'
_open.insert(std::make_pair(newlength-1, nxt->second+sz+1));
_tracker.set(nxt->second);
_open.erase(nxt);
return _data+nxt->second;
}
return clean(c, sz);
}
char*
clean(char const* c, std::size_t need)
{
// potentially very slow; try to find first location that fits c
for ( auto iter = _dirty.begin(); iter != _dirty.end(); iter = _dirty.erase(iter) ) {
std::size_t pos = *iter;
std::size_t lng = _tracker.next_set(pos, nelements);
if ( lng != _tracker.npos )
lng -= (pos+1); // +1 for '\0'; lng is at least 1 bigger than pos
else
lng = nelements + 1 - pos; // +1 b/c _data has nelements+1 elements with last == '\0'
if ( lng >= need ) {
std::strcpy(_data+pos, c);
_tracker.set(pos);
if ( lng-need > 1 ) // if == 1, can only hold '\0'
_open.insert(std::make_pair(lng-need-1, pos+need+1));
_dirty.erase(iter);
return _data+pos;
}
else
_open.insert(std::make_pair(lng, pos));
} // for
_dirty.clear();
return nullptr;
}
friend struct PooledCharMemory<nelements>;
static constexpr std::size_t BaseSize = std::numeric_limits<unsigned char>::digits;
static constexpr std::size_t NBits = Pow<BaseSize, IntLogN<BaseSize, nelements>::value>::value;
std::size_t _cc;
std::size_t _cntr;
char _data[nelements+1];
BitMonitor2<BaseSize, NBits> _tracker;
std::multimap<std::size_t, std::size_t> _open; // size, position
std::list<std::size_t> _dirty; // position
};
typedef CharChunk<Sz> MemChunk;
MemChunk* _curr;
MemChunk* _cache;
// Important to remember that _blocks, _blockstarts, _r all have the same #elements
std::set<MemChunk*, std::greater<MemChunk*>> _blocks;
std::set<char*, std::greater<char*>> _blockstarts;
std::map<char*, MemChunk*, std::greater<char*>> _r;
};
} // namespace Ext
#endif // UTILS_SIMPLE_CHARARRAY_MEM
|