1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
|
#!/usr/bin/make -f
export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')
DEB_VERSION := $(shell dpkg-parsechangelog | egrep '^Version:' | cut -f 2 -d ' ')
DEB_NOEPOCH_VERSION := $(shell echo $(DEB_VERSION) | cut -d: -f2-)
DEB_UPSTREAM_VERSION := $(shell echo $(DEB_NOEPOCH_VERSION) | sed 's/-[^-]*$$//')
%:
dh $@
override_dh_installchangelogs:
dh_installchangelogs RELEASE_HISTORY
override_dh_install:
dh_install
rm -f $(CURDIR)/debian/$(DEBPKGNAME)/usr/bin/groupBy # distributed in the filo package.
# make sure all *.sh files are featuring a '#!/bin/bash' as first line
# since there are at least two files (test/intersect/{new_test-intersect.sh,performanceTest.sh}
# requiring bash this is taken for all scripts instead of checking first via /bin/sh -n
for sh in `find $(CURDIR)/debian -name "*.sh"` ; do \
if ! head -n1 $${sh} | grep -q '^#! */bin/[ba]*sh' ; then \
sed -i '1 i #!/bin/bash' $${sh} ; \
fi ; \
done
override_dh_fixperms-arch:
dh_fixperms
chmod -x $(CURDIR)/debian/$(DEBPKGNAME)/usr/share/bedtools/genomes/*.genome
find $(CURDIR)/debian -name "*.bed" -executable -exec chmod -x \{\} \;
find $(CURDIR)/debian -name "*.sh" -not -executable -exec chmod +x \{\} \;
get-orig-source:
uscan --no-symlink --force-download --download-version $(DEB_UPSTREAM_VERSION)
|
