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UTILITIES_DIR = ../utils/
OBJ_DIR = ../../obj/
BIN_DIR = ../../bin/
# -------------------
# define our includes
# -------------------
INCLUDES = -I$(UTILITIES_DIR)/BamTools/include \
-I$(UTILITIES_DIR)/sequenceUtilities/ \
-I$(UTILITIES_DIR)/version/
# ----------------------------------
# define our source and object files
# ----------------------------------
SOURCES= bamToFastqMain.cpp bamToFastq.cpp bamToFastq.h
OBJECTS= bamToFastqMain.o bamToFastq.o
BUILT_OBJECTS= $(patsubst %,$(OBJ_DIR)/%,$(OBJECTS))
all: $(BUILT_OBJECTS)
.PHONY: all
$(BUILT_OBJECTS): $(SOURCES)
@echo " * compiling" $(*F).cpp
$(CXX) -c -o $@ $(*F).cpp $(LDFLAGS) $(CXXFLAGS) $(CPPFLAGS) $(INCLUDES)
clean:
@echo "Cleaning up."
@rm -f $(OBJ_DIR)/bamToFastqMain.o $(OBJ_DIR)/bamToFastq.o
.PHONY: clean
|
