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/*
* Bed3Interval.h
*
* Created on: Nov 8, 2012
* Author: nek3d
*/
#ifndef BED3INTERVAL_H_
#define BED3INTERVAL_H_
#include "Record.h"
#include "ParseTools.h"
#include "string.h"
class FileReader;
class SingleLineDelimTextFileReader;
class Bed3Interval : public Record {
public:
friend class FreeList<Bed3Interval>;
Bed3Interval();
bool initFromFile(FileReader *);
virtual bool initFromFile(SingleLineDelimTextFileReader *);
virtual void print(string &outBuf) const;
virtual void print(string &outBuf, int start, int end) const;
virtual void print(string &outBuf, const string & start, const string & end) const;
virtual void printNull(string &outBuf) const;
virtual FileRecordTypeChecker::RECORD_TYPE getType() const { return FileRecordTypeChecker::BED3_RECORD_TYPE; }
virtual const string &getField(int fieldNum) const;
virtual int getNumFields() const { return 3; }
static bool isNumericField(int fieldNum);
virtual ~Bed3Interval();
protected:
bool _skipFirstThreeFieldsWhenPrinting;
};
#endif /* BED3INTERVAL_H_ */
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