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#!/bin/sh -e
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/bedtools-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
# Copy test suite there
cp -a /usr/share/bedtools/test $AUTOPKGTEST_TMP
# Link to genomes files
cd $AUTOPKGTEST_TMP
ln -s /usr/share/bedtools/genomes
# Enter the directory and run the tests
cd $AUTOPKGTEST_TMP/test
# Configure test suite to call bedtools test elements installed on the OS,
# instead of the default fetching in the source tree.
export DATA="/usr/share/bedtools/data"
export BT="/usr/bin/bedtools"
export htsutil="$BT htsutil"
sh test.sh
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