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set -e; # Alert user to any uncaught error
#ulimit -c unlimited
STARTWD=$(pwd);
TOOL_PASSES="";
TOOL_FAILURES="";
for tool in $(ls); do
[ -d "${STARTWD}/${tool}" ] || continue;
echo "Testing bedtools $tool:";
cd "${STARTWD}/${tool}";
bash "test-${tool}.sh" \
&& TOOL_PASSES="$TOOL_PASSES $tool" \
|| TOOL_FAILURES="$TOOL_FAILURES $tool";
done
echo
echo
echo "--------------------------"
echo " Test Results "
echo "--------------------------"
echo "Tools passing: $TOOL_PASSES"
echo "Tools failing: $TOOL_FAILURES"
echo "NB: the 'negativecontrol' test is supposed to fail. If it wasn't caught, "
echo "something went wrong with this test script."
[ "$TOOL_FAILURES" = " negativecontrol" ] || exit 1;
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