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Source: bedtools
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>,
Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
python3:any,
zlib1g-dev,
libbz2-dev,
liblzma-dev
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/bedtools
Vcs-Git: https://salsa.debian.org/med-team/bedtools.git
Homepage: https://github.com/arq5x/bedtools2
Rules-Requires-Root: no
Package: bedtools
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Conflicts: filo
Provides: filo
Replaces: filo
Description: suite of utilities for comparing genomic features
The BEDTools utilities allow one to address common genomics tasks such as
finding feature overlaps and computing coverage. The utilities are largely
based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
BEDTools, one can develop sophisticated pipelines that answer complicated
research questions by streaming several BEDTools together.
.
The groupBy utility is distributed in the filo package.
Package: bedtools-test
Architecture: all
Multi-Arch: foreign
Depends: ${misc:Depends}, python3
Suggests: bedtools
Description: test data for the bedtools package
Test data for the BEDTools suite of utilities for comparing genomic features.
It is distributed in a separate package because it is large and
architecture-independent.
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