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#!/usr/bin/make -f
export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
include /usr/share/dpkg/default.mk
ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386))
export DEB_CXXFLAGS_MAINT_APPEND=-msse -mfpmath=sse
endif
%:
dh $@
override_dh_auto_build:
dh_auto_build -- VERBOSE=1
override_dh_auto_install:
dh_auto_install -- VERBOSE=1
# File no longer exists
#override_dh_installchangelogs:
# dh_installchangelogs RELEASE_HISTORY
override_dh_install:
dh_install
# make sure all *.sh files are featuring a '#!/bin/bash' as first line
# since there are at least two files (test/intersect/{new_test-intersect.sh,performanceTest.sh}
# requiring bash this is taken for all scripts instead of checking first via /bin/sh -n
for sh in `find $(CURDIR)/debian -name "*.sh"` ; do \
if ! head -n1 $${sh} | grep -q '^#! */bin/[ba]*sh' ; then \
sed -i '1 i #!/bin/bash' $${sh} ; \
fi ; \
done
override_dh_install-indep:
# Somehow the test dir is differently named than the script has it
# Since I fail to see how this test dir was to the script at all I
# simply change the script afterwards
sed -i 's/^cd groupby;/cd groupBy;/' debian/$(DEB_SOURCE)-test/usr/share/$(DEB_SOURCE)/test/test.sh
override_dh_fixperms-arch:
dh_fixperms
chmod -x $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/bedtools/genomes/*.genome
find $(CURDIR)/debian -name "*.bed" -executable -exec chmod -x \{\} \;
find $(CURDIR)/debian -name "*.sam" -executable -exec chmod -x \{\} \;
find $(CURDIR)/debian -name "*.sh" -not -executable -exec chmod +x \{\} \;
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipsel))
mv test/shuffle debian/
endif
htsutil="../../bin/bedtools htsutil" \
dh_auto_test
ifneq (,$(filter $(DEB_HOST_ARCH),i386 kfreebsd-i386 hurd-i386 armel armhf mipsel))
mv debian/shuffle test/
endif
endif
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