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cmake_minimum_required (VERSION 2.6)
project(express)
set(${PROJECT_NAME}_VERSION_MAJOR 1)
set(${PROJECT_NAME}_VERSION_MINOR 5)
set(${PROJECT_NAME}_VERSION_PATCH 1)
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
#set(CMAKE_CXX_FLAGS "-Wall")
#set(CMAKE_CXX_FLAGS_DEBUG "-g ${CMAKE_CXX_FLAGS}")
#set(CMAKE_CXX_FLAGS_RHDEBINFO "-O3 -g ${CMAKE_CXX_FLAGS}")
#set(CMAKE_CXX_FLAGS_MINSIZEREL "-Os ${CMAKE_CXX_FLAGS}")
#set(CMAKE_BUILD_TYPE Release)
set(Boost_USE_STATIC_LIBS OFF)
find_package(Boost 1.39
COMPONENTS
thread
system
filesystem
program_options
date_time
REQUIRED)
find_library(GPERFTOOLS_TCMALLOC_LIB tcmalloc)
if (GPERFTOOLS_TCMALLOC_LIB)
message(STATUS "Found GPERFTOOLS_TCMALLOC: ${GPERFTOOLS_TCMALLOC_LIB}")
else (GPERFTOOLS_TCMALLOC_LIB)
message(STATUS "Could NOT find GPERFTOOLS_TCMALLOC: Install to improve speed.")
endif(GPERFTOOLS_TCMALLOC_LIB)
find_package(Protobuf)
if (PROTOBUF_FOUND)
include_directories(${Boost_INCLUDE_DIRS} ${PROTOBUF_INCLUDE_DIR}
"/usr/include/bamtools")
set(PROTO_INT 1)
else (PROTOBUF_FOUND)
include_directories(${Boost_INCLUDE_DIRS} "/usr/include/bamtools")
set(PROTO_INT 0)
endif(PROTOBUF_FOUND)
if(WIN32)
if (EXISTS "${PROJECT_SOURCE_DIR}/bamtools/lib/libbamtools.lib")
set(BAMTOOLS_LIBRARIES "${PROJECT_SOURCE_DIR}/bamtools/lib/libbamtools.lib")
else()
find_library(BAMTOOLS_LIBRARIES libbamtools.lib)
endif()
set(CMAKE_CXX_FLAGS "/EHsc")
set(WIN32_INT 1)
else(WIN32)
if (EXISTS "${PROJECT_SOURCE_DIR}/bamtools/lib/libbamtools.a")
set(BAMTOOLS_LIBRARIES "${PROJECT_SOURCE_DIR}/bamtools/lib/libbamtools.a")
else()
# find_library(BAMTOOLS_LIBRARIES libbamtools.a)
message(STATUS "Do not try to find libbamtools.a")
set(BAMTOOLS_LIBRARIES bamtools)
endif()
set(WIN32_INT 0)
endif(WIN32)
if (NOT BAMTOOLS_LIBRARIES)
message(FATAL_ERROR "Could not find libbamtools")
endif(NOT BAMTOOLS_LIBRARIES)
configure_file (
"${PROJECT_SOURCE_DIR}/src/config.h.in"
"${PROJECT_SOURCE_DIR}/src/config.h"
)
add_subdirectory(src)
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