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Author: Michael R. Crusoe <crusoe@ucdavis.edu>
Last-Update: Fri, 21 Aug 2015 09:21:09 +0100
Description: Correct upstream typos
--- express.orig/src/lengthdistribution.cpp
+++ express/src/lengthdistribution.cpp
@@ -72,7 +72,7 @@
char line_buff[BUFF_SIZE];
if (!infile.is_open()) {
- logger.severe("Unable to open paramater file '%s'.",
+ logger.severe("Unable to open parameter file '%s'.",
param_file_name.c_str());
}
--- express.orig/src/main.cpp
+++ express/src/main.cpp
@@ -683,7 +683,7 @@
break;
}
{
- // Block the bias update thread from updating the paramater tables
+ // Block the bias update thread from updating the parameter tables
// during processing. We don't need to do this during multi-threaded
// processing since the parameters are burned out before we start
// the threads.
--- express.orig/src/markovmodel.h
+++ express/src/markovmodel.h
@@ -125,7 +125,7 @@
double marginal_prob(size_t w, size_t nuc) const;
/**
* Slides a window along the given sequence, incrementing the highest order
- * transition paramaters by the given mass multiplied by the probability of
+ * transition parameters by the given mass multiplied by the probability of
* observing a fragment at that distance from the end.
* @param seq the sequence to slide the window along.
* @param mass the amount to increment the parameters by.
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