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Source: bifrost
Standards-Version: 4.7.2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
Andreas Tille <tille@debian.org>,
Section: python
Priority: optional
Build-Depends:
debhelper-compat (= 13),
d-shlibs,
cmake,
zlib1g-dev,
Vcs-Browser: https://salsa.debian.org/med-team/bifrost
Vcs-Git: https://salsa.debian.org/med-team/bifrost.git
Homepage: https://github.com/pmelsted/bifrost
Rules-Requires-Root: no
Package: bifrost
Architecture: any
Depends:
${shlibs:Depends},
${misc:Depends},
Description: parallel construction, indexing and querying of de Bruijn graphs
Bifrost is a command-line tool for sequencing that features a broad
range of functions, such as indexing, editing, and querying the graph,
and includes a graph coloring method that maps each k-mer of the graph
to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
Package: libbifrost0
Architecture: any
Section: libs
Depends:
${shlibs:Depends},
${misc:Depends},
Description: library for parallel construction, indexing and querying of de Bruijn graphs
Libbifrost is the shared library for the command-line tool bifrost for
sequencing that features a broad range of functions, such as indexing,
editing, and querying the graph, and includes a graph coloring method
that maps each k-mer of the graph to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
Package: libbifrost-dev
Architecture: any
Section: libdevel
Depends:
libbifrost0 (= ${binary:Version}),
${shlibs:Depends},
${misc:Depends},
Description: static library and header files for libbifrost
Libbifrost-dev is the development library for the command-line tool
bifrost for sequencing that features a broad range of functions, such as
indexing, editing, and querying the graph, and includes a graph coloring
method that maps each k-mer of the graph to the genomes it occurs in.
.
* Build, index, color and query the compacted de Bruijn graph
* No need to build the uncompacted de Bruijn graph
* Reads or assembled genomes as input
* Output graph in GFA (can be visualized with Bandage), FASTA or binary
* Graph cleaning: short tip clipping, etc.
* Multi-threaded
* No parameters to estimate with other tools
* Exact or approximate k-mer search of queries
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