File: run-unit-test

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bifrost 1.3.5-2
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#!/bin/bash
set -e

pkg=bifrost

export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
  # shellcheck disable=SC2064
  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi

cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"

cd "${AUTOPKGTEST_TMP}"

gunzip *.gz
Bifrost build -t 4 -k 31 -i -d -s ecoli_1K_1.fq  -s ecoli_1K_2.fq  -o AB_graph