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CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) $(CPPFLAGS)
CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS)
LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
CC=gcc
CFLAGS+= -W -O2 -Wall -Wno-self-assign -Wno-unused-function
DFLAGS= -D_FILE_OFFSET_BITS=64
GLIBS=-lm
GENERIC_SRC= string.h bitvec.h file_reader.h hashset.h sort.h list.h dna.h heap.h stdaln.h vector.h
.SUFFIXES:.c .o
.c.o:
$(CC) -c $(CFLAGS) $(DFLAGS) $< -o $@
#all: rainbow rbasm rbmergetag ezmsim
all: bio-rainbow ezmsim rbasm
bio-rainbow: main.o divide.o file_reader.o asm_R2.o mergectg.o cluster.o
$(CC) $(LDFLAGS) $(CFLAGS) -o $@ $^ $(GLIBS)
rbasm: asm_R2.o rbasm_main.o file_reader.o
$(CC) $(LDFLAGS) $(CFLAGS) -o $@ $^ $(GLIBS)
ezmsim: ezmsim.o
$(CC) $(LDFLAGS) $(CFLAGS) -o $@ $^ $(GLIBS)
asm_R2.o: asm_R2.c asm_R2.h string.h vector.h hashset.h file_reader.h \
dna.h
cluster.o: cluster.c rainbow.h bitvec.h hashset.h list.h sort.h dna.h \
file_reader.h string.h vector.h mergectg.h stdaln.h asm_R2.h \
bloom_filter.h
divide.o: divide.c rainbow.h bitvec.h hashset.h list.h sort.h dna.h \
file_reader.h string.h vector.h mergectg.h stdaln.h asm_R2.h \
bloom_filter.h
ezmsim.o: ezmsim.c
file_reader.o: file_reader.c file_reader.h string.h vector.h
main.o: main.c rainbow.h bitvec.h hashset.h list.h sort.h dna.h \
file_reader.h string.h vector.h mergectg.h stdaln.h asm_R2.h \
bloom_filter.h
mergectg.o: mergectg.c mergectg.h list.h sort.h file_reader.h string.h \
vector.h hashset.h stdaln.h asm_R2.h dna.h bloom_filter.h bitvec.h \
rainbow.h
rbasm_main.o: rbasm_main.c asm_R2.h string.h vector.h hashset.h \
file_reader.h dna.h
stdaln.o: stdaln.c stdaln.h
clean:
rm -f *.o *.gcda *.gcno *.gcov gmon.out bio-rainbow rbasm ezmsim rbmergetag *.exe
clear:
rm -f *.o *.gcda *.gcno *.gcov gmon.out
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