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Source: bio-tradis
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: perl
# Testsuite: autopkgtest-pkg-perl
Priority: optional
Build-Depends: debhelper-compat (= 12)
Build-Depends-Indep: libbio-perl-perl,
libenv-path-perl,
libexception-class-perl,
libmoose-perl,
libtest-exception-perl,
libtest-files-perl,
libtest-most-perl,
libtest-simple-perl,
libtext-csv-perl,
libtry-tiny-perl,
perl,
samtools,
smalt,
tabix,
bwa
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/bio-tradis
Vcs-Git: https://salsa.debian.org/med-team/bio-tradis.git
Homepage: https://github.com/sanger-pathogens/Bio-Tradis
Package: bio-tradis
Architecture: all
Depends: ${misc:Depends},
${perl:Depends},
libbio-perl-perl,
libexception-class-perl,
libmoose-perl,
libtext-csv-perl,
libtry-tiny-perl,
smalt,
samtools,
tabix,
r-base-core,
r-cran-getopt,
r-cran-mass
Suggests: artemis,
r-bioc-edger
Description: analyse the output from TraDIS analyses of genomic sequences
Bio-Tradis contains a set of tools to analyse the output from
TraDIS analyses.
.
The Bio-Tradis analysis pipeline is implemented as an extensible Perl
library which can either be used as is, or as a basis for the
development of more advanced analysis tools.
.
Please note: You need to manually install BioConductor Edger which can
not be distributed by Debian in recent version since it is using
non-distributable code locfit.
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