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Source: bio-vcf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Testsuite: autopkgtest-pkg-ruby
Priority: optional
Build-Depends: debhelper-compat (= 13),
gem2deb
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/bio-vcf
Vcs-Git: https://salsa.debian.org/med-team/bio-vcf.git
Homepage: https://rubygems.org/gems/bio-vcf/
XS-Ruby-Versions: all
Rules-Requires-Root: no
Package: bio-vcf
Architecture: all
XB-Ruby-Versions: ${ruby:Versions}
Depends: ruby | ruby-interpreter,
${misc:Depends}
Description: domain specific language (DSL) for processing the VCF format
Bio-vcf provides a domain specific language (DSL) for processing the
VCF format. Record named fields can be queried with regular
expressions, e.g.
.
sample.dp>20 and rec.filter !~ /LowQD/ and rec.tumor.bcount[rec.alt]>4
.
Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf
is not only very fast for genome-wide (WGS) data, it also comes with a
really nice filtering, evaluation and rewrite language and it can
output any type of textual data, including VCF header and contents in
RDF and JSON.
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