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/*
* DPSerializationTest.java
* JUnit based test
*
* Created on September 27, 2007, 10:17 AM
*/
package org.biojava.bio.dp;
import java.io.ByteArrayInputStream;
import java.io.ByteArrayOutputStream;
import java.io.ObjectInputStream;
import java.io.ObjectOutputStream;
import junit.framework.*;
import org.biojava.bio.dist.DistributionFactory;
import org.biojava.bio.dp.onehead.SingleDP;
import org.biojava.bio.seq.DNATools;
/**
* Test of fix for bug #2359
* @author Mark Schreiber
*/
public class DPSerializationTest extends TestCase {
public DPSerializationTest(String testName) {
super(testName);
}
public void testDPSerialization() throws Exception{
MarkovModel model = new ProfileHMM(DNATools.getDNA(),5,DistributionFactory.DEFAULT, DistributionFactory.DEFAULT, "test");
DP singleDP = new SingleDP(model);
MarkovModel model2 = new SimpleMarkovModel(2, DNATools.getDNA(), "pair");
DP pairDP = DPFactory.DEFAULT.createDP(model2);
ByteArrayOutputStream baos = new ByteArrayOutputStream();
ObjectOutputStream oos = new ObjectOutputStream(baos);
oos.writeObject(singleDP);
oos.writeObject(pairDP);
oos.flush();
oos.close();
ObjectInputStream ois = new ObjectInputStream(new ByteArrayInputStream(baos.toByteArray()));
DP dp = (DP)ois.readObject();
assertEquals(singleDP.getClass(), dp.getClass());
DP dp2 = (DP)ois.readObject();
assertEquals(pairDP.getClass(), dp2.getClass());
}
}
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