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/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.bio.program.fastq;
import java.io.IOException;
/**
* Unit test for SangerFastqWriter.
*/
public final class SangerFastqWriterTest
extends AbstractFastqWriterTest
{
/** {@inheritDoc} */
protected FastqWriter createFastqWriter()
{
return new SangerFastqWriter();
}
/** {@inheritDoc} */
protected Fastq createFastq()
{
return new FastqBuilder()
.withDescription("description")
.withSequence("sequence")
.withQuality("quality_")
.withVariant(FastqVariant.FASTQ_SANGER)
.build();
}
public void testValidateNotSangerVariant()
{
SangerFastqWriter writer = new SangerFastqWriter();
Appendable appendable = new StringBuilder();
Fastq invalid = new FastqBuilder()
.withDescription("description")
.withSequence("sequence")
.withQuality("quality_")
.withVariant(FastqVariant.FASTQ_SOLEXA)
.build();
try
{
writer.append(appendable, invalid);
fail("validate not fastq-sanger variant expected IOException");
}
catch (IOException e)
{
// expected
}
}
}
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