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/*
* BioJava development code
*
* This code may be freely distributed and modified under the
* terms of the GNU Lesser General Public Licence. This should
* be distributed with the code. If you do not have a copy,
* see:
*
* http://www.gnu.org/copyleft/lesser.html
*
* Copyright for this code is held jointly by the individual
* authors. These should be listed in @author doc comments.
*
* For more information on the BioJava project and its aims,
* or to join the biojava-l mailing list, visit the home page
* at:
*
* http://www.biojava.org/
*
*/
package org.biojava.bio.symbol;
import junit.framework.TestCase;
/**
* Automated tests for BetweenLocation operations.
*
* @author Greg Cox
*/
public class BetweenLocationTest extends TestCase
{
// Static variables
// Member variables
private Location betweenFiveSix;
private Location betweenFiveSeven;
private Location betweenFiveTen;
private Location betweenSevenTwelve;
private Location betweenNineEleven;
private Location betweenTenEleven;
private Location rangeOneTen;
private Location rangeFiveSix;
// Constructors and initialization
public BetweenLocationTest(String theName)
{
super(theName);
}
// Interface implementations
// Public methods
/**
* Runs the unit tests defined here.
*/
public static void main(String args[])
{
junit.textui.TestRunner.run(BetweenLocationTest.class);
}
// Test intersection operator
public void testIntersectionOneTenBetweenFiveSix()
{
Location expected = new BetweenLocation(new RangeLocation(5, 6));
Location result = LocationTools.intersection(rangeOneTen, betweenFiveSix);
this.assertEqual(expected, result);
}
public void testIntersectionOneTenBetweenFiveSeven()
{
Location expected = new BetweenLocation(new RangeLocation(5, 7));
Location result = LocationTools.intersection(rangeOneTen, betweenFiveSeven);
this.assertEqual(expected, result);
}
public void testIntersectionOneTenBetweenTenEleven()
{
Location expected = Location.empty;
Location result = LocationTools.intersection(rangeOneTen, betweenTenEleven);
this.assertEqual(expected, result);
}
public void testIntersectionOneTenBetweenNineEleven()
{
Location expected = new BetweenLocation(new RangeLocation(9, 10));
Location result = LocationTools.intersection(rangeOneTen, betweenNineEleven);
this.assertEqual(expected, result);
}
public void testIntersectionBetweenFiveSixBetweenFiveSix()
{
Location expected = new BetweenLocation(new RangeLocation(5, 6));
Location result = LocationTools.intersection(betweenFiveSix, betweenFiveSix);
this.assertEqual(expected, result);
}
public void testIntersectionBetweenFiveTenBetweenFiveSix()
{
Location expected = new BetweenLocation(new RangeLocation(5, 6));
Location result = LocationTools.intersection(betweenFiveTen, betweenFiveSix);
this.assertEqual(expected, result);
}
public void testIntersectionBetweenFiveTenBetweenSevenTwelve()
{
Location expected = new BetweenLocation(new RangeLocation(7, 10));
Location result = LocationTools.intersection(betweenFiveTen, betweenSevenTwelve);
this.assertEqual(expected, result);
}
// Test overlaps operator
public void testOverlapsOneTenBetweenFiveSix()
{
assertTrue(LocationTools.overlaps(rangeOneTen, betweenFiveSix));
}
public void testOverlapsOneTenBetweenFiveSeven()
{
assertTrue(LocationTools.overlaps(rangeOneTen, betweenFiveSeven));
}
public void testOverlapsOneTenBetweenTenEleven()
{
assertTrue(!LocationTools.overlaps(rangeOneTen, betweenTenEleven));
}
public void testOverlapsOneTenBetweenNineEleven()
{
assertTrue(LocationTools.overlaps(rangeOneTen, betweenNineEleven));
}
public void testOverlapsBetweenFiveSixBetweenFiveSix()
{
assertTrue(LocationTools.overlaps(betweenFiveSix, betweenFiveSix));
}
public void testOverlapsBetweenFiveTenBetweenFiveSix()
{
assertTrue(LocationTools.overlaps(betweenFiveTen, betweenFiveSix));
}
public void testOverlapsBetweenFiveTenBetweenSevenTwelve()
{
assertTrue(LocationTools.overlaps(betweenFiveTen, betweenSevenTwelve));
}
// Test equals operator
public void testAreEqualRangeFiveSixBetweenFiveSix()
{
assertTrue(!LocationTools.areEqual(rangeFiveSix, betweenFiveSix));
}
public void testAreEqualBetweenFiveSixBetweenFiveSix()
{
assertTrue(LocationTools.areEqual(betweenFiveSix, betweenFiveSix));
}
public void testAreEqualBetweenFiveSixBetweenFiveTen()
{
assertTrue(!LocationTools.areEqual(betweenFiveSix, betweenFiveTen));
}
// Test contains operator
public void testContainsOneTenBetweenFiveSix()
{
assertTrue(LocationTools.contains(rangeOneTen, betweenFiveSix));
}
public void testContainsBetweenFiveSixOneTen()
{
assertTrue(!LocationTools.contains(betweenFiveSix, rangeOneTen));
}
public void testContainsOneTenBetweenFiveSeven()
{
assertTrue(LocationTools.contains(rangeOneTen, betweenFiveSeven));
}
public void testContainsOneTenBetweenTenEleven()
{
assertTrue(!LocationTools.contains(rangeOneTen, betweenTenEleven));
}
public void testContainsOneTenBetweenNineEleven()
{
assertTrue(!LocationTools.contains(rangeOneTen, betweenNineEleven));
}
public void testContainsBetweenFiveSixBetweenFiveSix()
{
assertTrue(LocationTools.contains(betweenFiveSix, betweenFiveSix));
}
public void testContainsBetweenFiveTenBetweenFiveSix()
{
assertTrue(LocationTools.contains(betweenFiveTen, betweenFiveSix));
}
public void testContainsBetweenFiveSixBetweenFiveTen()
{
assertTrue(!LocationTools.contains(betweenFiveSix, betweenFiveTen));
}
public void testContainsBetweenFiveTenBetweenSevenTwelve()
{
assertTrue(!LocationTools.contains(betweenFiveTen, betweenSevenTwelve));
}
public void testContainsBetweenSevenTwelveBetweenFiveTen()
{
assertTrue(!LocationTools.contains(betweenSevenTwelve, betweenFiveTen));
}
// Test union operator
public void testUnionRangeOneTenBetweenFiveSix()
{
}
public void testUnionRangeOneTenBetweenFiveSeven()
{
}
public void testUnionRangeOneTenBetweenTenEleven()
{
}
public void testUnionRangeOneTenBetweenNineEleven()
{
}
public void testUnionBetweenFiveSixBetweenFiveSix()
{
}
public void testUnionBetweenFiveTenBetweenFiveSix()
{
}
public void testUnionBetweenFiveTenBetweenSevenTwelve()
{
}
// Protected methods
protected void setUp()
{
betweenFiveSix = new BetweenLocation(new RangeLocation(5, 6));
betweenFiveSeven = new BetweenLocation(new RangeLocation(5, 7));
betweenFiveTen = new BetweenLocation(new RangeLocation(5, 10));
betweenSevenTwelve = new BetweenLocation(new RangeLocation(7, 12));
betweenNineEleven = new BetweenLocation(new RangeLocation(9, 11));
betweenTenEleven = new BetweenLocation(new RangeLocation(10, 11));
rangeOneTen = new RangeLocation(1, 10);
rangeFiveSix = new RangeLocation(5, 6);
}
// Private methods
/**
* This method assumes that the only decorator to deal with is between
* location. Because of sheer lazyness, Between(5,10) and Circular(5,10)
* will return as equal from this method.
*/
private void assertEqual(Location theLocationA, Location theLocationB)
{
boolean locationAWrapped = false;
boolean locationBWrapped = false;
try
{
// Unwrap decorations
if(LocationTools.isDecorated(theLocationA))
{
locationAWrapped = true;
theLocationA = ((AbstractLocationDecorator)theLocationA).getWrapped();
}
if(LocationTools.isDecorated(theLocationB))
{
locationBWrapped = true;
theLocationB = ((AbstractLocationDecorator)theLocationB).getWrapped();
}
}
catch(ClassCastException cce)
{
throw new org.biojava.bio.BioError("Not possible: decorated by other than abstract location decorator");
}
assertTrue("The locations do not have the same decorators", locationAWrapped == locationBWrapped);
// Delegate to LocationTools
boolean result = LocationTools.areEqual(theLocationA, theLocationB);
if(result == false)
{
fail("Locations not equal: " + theLocationA + " and " + theLocationB);
}
}
}
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