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package org.biojava.utils.regex;
import junit.framework.TestCase;
import org.biojava.bio.seq.DNATools;
public class PatternCheckerTest
extends TestCase
{
String [] patterns =
{ "tcag",
"tnag",
"tc(ac|gt)ag",
"tc[ac]gt",
"tc?gt",
"tc??gt" };
String [] expected =
{ "tcag",
"t[acgt]ag",
"tc(ac|gt)ag",
"tc[ac]gt",
"tc?gt",
"tc??gt" };
public void testPatternChecker()
throws Exception
{
for (int i=0; i < patterns.length; i++) {
String testString = patterns[i];
PatternChecker checker = new PatternChecker(DNATools.getDNA());
String result = checker.parse(testString);
// System.out.println(testString + " " + result + " " + expected[i]);
assertEquals(
"failure on test " + i,
result,
expected[i]);
}
}
}
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