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Source: biojava-live
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Andreas Tille <tille@debian.org>,
Olivier Sallou <osallou@debian.org>,
Pierre Gruet <pgt@debian.org>
Section: java
Priority: optional
Build-Depends: debhelper-compat (= 13),
maven-debian-helper
Build-Depends-Indep: default-jdk,
junit4 <!nocheck>,
libcommons-dbcp-java,
libjaxb-api-java,
libjgrapht0.8-java,
libjgrapht0.8-java-doc,
libmaven-javadoc-plugin-java,
libxerces2-java
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/biojava-live
Vcs-Git: https://salsa.debian.org/med-team/biojava-live.git
Homepage: https://www.biojava.org
Rules-Requires-Root: no
Package: libbiojava1.9-java
Architecture: all
Depends: ${misc:Depends},
${maven:Depends}
Suggests: libbiojava-java,
libbiojava-java-doc,
${maven:OptionalDepends}
Conflicts: libbiojava1.7-java
Replaces: libbiojava1.7-java
Description: Java API to biological data and applications (version 1.9)
This package presents the Open Source Java API to biological databases
and a series of mostly sequence-based algorithms. The APIs are not
compatible between versions. In analogy to the dealing with shared
libraries of the C language, the jar file of this package has the
API version in its name. It is symbolically linked to the expected
biojava.jar filename in the package libbiojava-java. This will help
keeping multiple versions of the biojava API in parallel.
Package: libbiojava-java
Architecture: all
Depends: libbiojava1.9-java,
${misc:Depends}
Conflicts: libbiojava1.7-java
Replaces: libbiojava1.7-java
Description: Java API to biological data and applications (default version)
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data. It includes objects for manipulating
sequences, file parsers, DAS client and server support, access to BioSQL
and Ensembl databases, and powerful analysis and statistical routines
including a dynamic programming toolkit.
.
BioJava is provided by a vibrant community which meets annually at
the Bioinformatics Open Source Conference (BOSC) that traditionally
accompanies the Intelligent Systems in Molecular Biology (ISMB)
meeting. Much like BioPerl, the employment of this library is valuable
for everybody active in the field because of the many tricks of the
trade one learns just by communicating on the mailing list.
.
This is a dependency package which should enable smooth upgrades to new
versions.
Package: libbiojava-java-doc
Architecture: all
Section: doc
Depends: ${misc:Depends},
${maven:DocDepends}
Suggests: libbiojava-java,
${maven:DocOptionalDepends}
Multi-Arch: foreign
Description: [Biology] Documentation for BioJava
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data.
.
This package contains the HTML documentation describing the API of BioJava
which was generated automatically by JavaDoc.
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