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<?xml version="1.0" ?>
<project name="BJLIB" default="jar" basedir=".">
<!-- Directory structure -->
<property name="build.dir" location="../build/BJLIB"/>
<property name="test.dir" location="../buildtest/BJLIB"/>
<property name="dist.dir" location="../dist"/>
<property name="src.dir" location="src/main/java"/>
<property name="resources.dir" location="src/main/resources"/>
<property name="test.src.dir" location="src/test/java"/>
<property name="test.resources.dir" location="src/test/resources"/>
<property name="lib.dir" location="/usr/share/java"/>
<property name="docs.dir" location="../javadoc"/>
<property name="docs.lib.dir" location="../doc/BJLIB"/>
<property name="class.dir" location="${build.dir}/classes"/>
<property name="test.class.dir" location="${test.dir}/classes"/>
<property name="project.name" value="biojava"/>
<property name="debug" value="true"/>
<property name="optimized" value="true"/>
<property name="project.version" value="1.8.2"/>
<property environment="env"/>
<property name="project.jarfile.name" value="BJLIB.jar"/>
<property name="class.path" value="${lib.dir}/commons-logging.jar ${lib.dir}/commons-cli.jar ${lib.dir}/commons-collections3.jar ${lib.dir}/commons-dbcp.jar ${lib.dir}/junit4.jar ${lib.dir}/commons-pool.jar ${lib.dir}/guava.jar ${lib.dir}/jgrapht0.8.jar ${lib.dir}/Jmol.jar /usr/share/icedtea-web/netx.jar ${lib.dir}/hamcrest.jar ${lib.dir}/json_simple.jar ${lib.dir}/commons-codec.jar ${lib.dir}/itext5.jar ${lib.dir}/Jmol.jar ${lib.dir}/log4j-1.2.jar ${lib.dir}/json-simple.jar"/>
<path id="compile.classpath">
<fileset dir="${lib.dir}">
<include name="commons-cli.jar"/>
<include name="commons-collections3.jar"/>
<include name="commons-dbcp.jar"/>
<include name="commons-logging.jar"/>
<include name="commons-pool.jar"/>
<include name="commons-codec.jar"/>
<include name="itext5.jar"/>
<include name="Jmol.jar"/>
<include name="junit4.jar"/>
<include name="guava.jar"/>
<include name="jgrapht0.8.jar"/>
<include name="JmolApplet.jar"/>
<include name="hamcrest.jar"/>
<include name="json-simple.jar"/>
<include name="log4j-1.2.jar"/>
</fileset>
<fileset dir="${dist.dir}">
<include name="*.jar"/>
</fileset>
<fileset dir="/usr/share/icedtea-web">
<include name="netx.jar"/>
</fileset>
</path>
<target name="clean">
<echo level="info">Cleaning build directories</echo>
<delete verbose="true" includeEmptyDirs="true">
<fileset dir="${build.dir}" includes="**"/>
<fileset dir="${dist.dir}" includes="${project.name}*.jar"/>
</delete>
</target>
<target name="javadocs">
<mkdir dir="${docs.dir}"/>
<mkdir dir="${docs.lib.dir}"/>
<javadoc destdir="${docs.lib.dir}" sourcepath="${src.dir}" packagenames="org.*" encoding="UTF-8">
<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
</javadoc>
</target>
<target name="compile">
<mkdir dir="${class.dir}"/>
<mkdir dir="${dist.dir}"/>
<javac srcdir="${src.dir}" destdir="${class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true" source="1.6" target="1.6">
</javac>
<copy todir="${class.dir}" failonerror="false">
<fileset dir="${resources.dir}"/>
</copy>
</target>
<target name="compile-test">
<mkdir dir="${test.class.dir}"/>
<javac srcdir="${test.src.dir}" destdir="${test.class.dir}" classpathref="compile.classpath" debug="${debug}" optimize="${optimized}" nowarn="true">
</javac>
<copy todir="${test.class.dir}" failonerror="false">
<fileset dir="${test.resources.dir}"/>
</copy>
<copy todir="${test.class.dir}" failonerror="false">
<fileset dir="${src.dir}"/>
</copy>
</target>
<path id="test.classpath">
<path refid="compile.classpath"/>
<pathelement location="${test.class.dir}" />
</path>
<target name="test" depends="compile-test">
<junit haltonfailure="yes" printsummary="yes" fork="true">
<classpath refid="test.classpath"/>
<formatter type="plain" usefile="false" />
<batchtest>
<fileset dir="${test.class.dir}" includes="**/*Test.class" excludes="**/Abstract*.class" />
</batchtest>
</junit>
</target>
<target name="jar" depends="compile">
<jar destfile="${dist.dir}/${project.jarfile.name}" basedir="${class.dir}" >
<manifest>
<attribute name="Built-By" value="Debian-Med team"/>
<attribute name="Class-Path" value="${class.path}"/>
<attribute name="Specification-Title" value="BioJava"/>
<attribute name="Specification-Version" value="${project.version}"/>
</manifest>
</jar>
</target>
</project>
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