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#!/bin/bash
set -e
PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
VERSION=`uscan --verbose --force-download |
grep "Newest version of biojava4-live on remote site is .* local version is .*" |
head -n 1 |
sed "s/.*Newest version of biojava4-live on remote site is \([a-z0-9.]\+\),.*/\1/"`
mkdir -p ../tarballs
cd ../tarballs
UTAR="biojava-${VERSION}.tar.gz"
mv ../${UTAR} .
tar -xaf ${UTAR}
mv biojava-biojava-${VERSION} $PKG-${VERSION}.orig # .orig is requested by Developers Reference 3.4.4 ยง6.7.8.2
cd $PKG-${VERSION}.orig
rm -rf target
rm -rf biojava/dist/*.jar
mkdir -p biojava-forester/src/main/java
cd biojava-forester/src/main/java
#wget http://www.biojava.org/download/maven/org/forester/forester-1.005-sources/1.005/forester-1.005-sources-1.005.jar
#wget http://www.biojava.org/download/maven/org/forester/forester-lgpl/1.005/forester-lgpl-1.005-sources.jar
wget -O forester-1.038-sources.jar "https://search.maven.org/remotecontent?filepath=org/biojava/thirdparty/forester/1.038/forester-1.038-sources.jar"
#jar xf forester-1.005-sources-1.005.jar
#jar xf forester-lgpl-1.005-sources.jar
jar xf forester-1.038-sources.jar
find . -name *.class | xargs rm -f
rm -f resources/*.jar
rm forester-1.038-sources.jar
#rm forester-lgpl-1.005-sources.jar
#rm forester-1.005-sources-1.005.jar
cd ../../../..
mkdir -p biojava-jcolorbrewer/src/main/java
cd biojava-jcolorbrewer/src/main/java
wget -O jcolorbrewer-5.2-sources.jar "https://search.maven.org/remotecontent?filepath=org/biojava/jcolorbrewer/5.2/jcolorbrewer-5.2-sources.jar"
jar xf jcolorbrewer-5.2-sources.jar
rm jcolorbrewer-5.2-sources.jar
cd ../../../..
cd ..
tar --owner=root --group=root --mode=a+rX -caf ${PKG}_${VERSION}+dfsg.orig.tar.xz ${PKG}-${VERSION}.orig
rm -rf ${PKG}-${VERSION}.orig
rm ${UTAR}
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