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// $Id:
// FORESTER -- software libraries and applications
// for evolutionary biology research and applications.
//
// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// Copyright (C) 2000-2001 Washington University School of Medicine
// and Howard Hughes Medical Institute
// All rights reserved
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.phylogeny.data;
import java.io.IOException;
import java.io.Writer;
import java.math.BigDecimal;
import org.forester.io.parsers.phyloxml.PhyloXmlMapping;
import org.forester.util.ForesterUtil;
public class Date implements PhylogenyData {
private String _desc;
private BigDecimal _value;
private BigDecimal _min;
private BigDecimal _max;
private String _unit;
public Date() {
_desc = "";
_value = null;
_min = null;
_max = null;
_unit = "";
}
public Date( final String desc ) {
if ( desc == null ) {
throw new IllegalArgumentException( "illegaly empty of null fields in constructor" );
}
_desc = desc;
_value = null;
_min = null;
_max = null;
_unit = "";
}
public Date( final String desc,
final BigDecimal value,
final BigDecimal min,
final BigDecimal max,
final String unit ) {
if ( ( desc == null ) || ( unit == null ) ) {
throw new IllegalArgumentException( "illegaly empty of null fields in constructor" );
}
_desc = desc;
_value = value;
_min = min;
_max = max;
_unit = unit;
}
@Override
public StringBuffer asSimpleText() {
if ( getValue() != null ) {
return new StringBuffer( getDesc() + " [" + getValue().toPlainString() + " " + getUnit() + "]" );
}
else {
return new StringBuffer( getDesc() );
}
}
@Override
public StringBuffer asText() {
return asSimpleText();
}
@Override
public PhylogenyData copy() {
return new Date( getDesc(),
getValue() == null ? null : new BigDecimal( getValue().toPlainString() ),
getMin() == null ? null : new BigDecimal( getMin().toPlainString() ),
getMax() == null ? null : new BigDecimal( getMax().toPlainString() ),
getUnit() );
}
public String getDesc() {
return _desc;
}
public BigDecimal getMax() {
return _max;
}
public BigDecimal getMin() {
return _min;
}
public String getUnit() {
return _unit;
}
public BigDecimal getValue() {
return _value;
}
@Override
public boolean isEqual( final PhylogenyData data ) {
throw new UnsupportedOperationException();
}
public void setDesc( final String desc ) {
_desc = desc;
}
public void setMax( final BigDecimal max ) {
_max = max;
}
public void setMin( final BigDecimal min ) {
_min = min;
}
public void setUnit( final String unit ) {
_unit = unit;
}
public void setValue( final BigDecimal value ) {
_value = value;
}
@Override
public StringBuffer toNHX() {
throw new UnsupportedOperationException();
}
@Override
public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException {
writer.write( ForesterUtil.LINE_SEPARATOR );
writer.write( indentation );
PhylogenyDataUtil.appendOpen( writer, PhyloXmlMapping.CLADE_DATE, PhyloXmlMapping.CLADE_DATE_UNIT, getUnit() );
if ( !ForesterUtil.isEmpty( getDesc() ) ) {
PhylogenyDataUtil.appendElement( writer, PhyloXmlMapping.CLADE_DATE_DESC, getDesc(), indentation );
}
if ( getValue() != null ) {
PhylogenyDataUtil.appendElement( writer,
PhyloXmlMapping.CLADE_DATE_VALUE,
getValue().toPlainString(),
indentation );
}
if ( getMin() != null ) {
PhylogenyDataUtil.appendElement( writer,
PhyloXmlMapping.CLADE_DATE_MIN,
getMin().toPlainString(),
indentation );
}
if ( getMax() != null ) {
PhylogenyDataUtil.appendElement( writer,
PhyloXmlMapping.CLADE_DATE_MAX,
getMax().toPlainString(),
indentation );
}
writer.write( ForesterUtil.LINE_SEPARATOR );
writer.write( indentation );
PhylogenyDataUtil.appendClose( writer, PhyloXmlMapping.CLADE_DATE );
}
@Override
public String toString() {
return asSimpleText().toString();
}
}
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