File: adapting_to_jgrapht1.5.1.patch

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Description: Some packages have changed in jgrapht 1.5.1
Author: Pierre Gruet <pgt@debian.org>
Forwarded: https://github.com/biojava/biojava/issues/988
Last-Update: 2021-10-19

--- a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.java
+++ b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/CeSymmIterative.java
@@ -45,7 +45,7 @@
 import org.biojava.nbio.structure.symmetry.internal.CESymmParameters.SymmetryType;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 import org.jgrapht.graph.SimpleGraph;
 import org.slf4j.Logger;
--- a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.java
+++ b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentOrderDetector.java
@@ -29,7 +29,7 @@
 import org.biojava.nbio.structure.align.model.AFPChain;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 
 /**
--- a/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.java
+++ b/biojava-structure/src/main/java/org/biojava/nbio/structure/symmetry/internal/GraphComponentRefiner.java
@@ -35,7 +35,7 @@
 import org.biojava.nbio.structure.align.util.AlignmentTools;
 import org.biojava.nbio.structure.symmetry.utils.SymmetryTools;
 import org.jgrapht.Graph;
-import org.jgrapht.alg.ConnectivityInspector;
+import org.jgrapht.alg.connectivity.ConnectivityInspector;
 import org.jgrapht.graph.DefaultEdge;
 
 /**