1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
|
Description: Including forester and jcolorbrewer into the Maven build
Author: Pierre Gruet <pgt@debian.org>
Forwarded: not-needed
Last-Update: 2021-10-19
--- a/pom.xml
+++ b/pom.xml
@@ -685,6 +685,8 @@
<module>biojava-survival</module>
<module>biojava-ontology</module>
<module>biojava-protein-comparison-tool</module>
+ <module>biojava-forester</module>
+ <module>biojava-jcolorbrewer</module>
<!-- Keep integration tests last -->
<module>biojava-integrationtest</module>
</modules>
--- a/biojava-alignment/pom.xml
+++ b/biojava-alignment/pom.xml
@@ -51,8 +51,9 @@
<scope>compile</scope>
</dependency>
<dependency>
- <groupId>org.biojava.thirdparty</groupId>
- <artifactId>forester</artifactId>
+ <groupId>org.biojava</groupId>
+ <artifactId>biojava-forester</artifactId>
+ <version>${project.parent.version}</version>
</dependency>
<!-- logging dependencies (managed by parent pom, don't set versions or
scopes here) -->
--- a/biojava-structure-gui/pom.xml
+++ b/biojava-structure-gui/pom.xml
@@ -65,8 +65,8 @@
</dependency>
<dependency>
<groupId>org.biojava</groupId>
- <artifactId>jcolorbrewer</artifactId>
- <version>5.2</version>
+ <artifactId>biojava-jcolorbrewer</artifactId>
+ <version>${project.parent.version}</version>
</dependency>
</dependencies>
<properties>
|
