File: localprocess.properties

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biomaj3 3.1.8-1
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[GENERAL]
######################
### Initialization ###

db.fullname="local system bank test"
db.name=local
db.type=nucleic_protein

offline.dir.name=offline/test/local_tmp
dir.version=test/local

frequency.update=0

### Synchronization ###

files.num.threads=1

# NCBI (download fasta)
protocol=local
server=

release.file=
release.regexp=
release.file.compressed=

remote.dir=/tmp/
remote.files=^test.*

#Uncomment if you don't want to extract the data files.
#no.extract=true

local.files=^test.*

## Pre process
db.pre.process=META0

## Remove process
db.remove.process=META0

## Post Process  ##  The files should be located in the projectfiles/process directory
BLOCKS=BLOCK1,BLOCK2
BLOCK1.db.post.process=META0
BLOCK2.db.post.process=META1,META2,META3
META0=PROC0
META1=PROC1,PROC2
META2=PROC3
META3=PROC4,PROC5


PROC0.name=test0
PROC0.desc=sample test
PROC0.cluster=false
PROC0.type=test
PROC0.exe=echo
PROC0.args=test $datadir

PROC1.name=test1
PROC1.desc=sample test
PROC1.cluster=false
PROC1.type=test
PROC1.exe=touch
PROC1.args=$datadir/$dirversion/$localrelease/proc1.txt

PROC2.name=test2
PROC2.desc=sample test
PROC2.cluster=false
PROC2.type=test
PROC2.exe=touch
PROC2.args=$datadir/$dirversion/$localrelease/proc2.txt

PROC3.name=test3
PROC3.desc=sample test
PROC3.cluster=false
PROC3.type=test
PROC3.exe=echo
PROC3.args=test 3

PROC4.name=test4
PROC4.desc=sample test
PROC4.cluster=false
PROC4.type=test
PROC4.exe=echo
PROC4.args=test 4

PROC5.name=test5
PROC5.desc=sample test
PROC5.cluster=false
PROC5.type=testmetadata
PROC5.exe=test.sh
PROC5.args=
PROC5.format=test
PROC5.types=any
PROC5.tags=chr:chr1,organism:hg19
# If files is set, then the post-process does not have to print generated files on STDOUT (but can)
# in this case, the list of files will be extracted from this list with above format/types/tags
PROC5.files=dir1/file1,dir1/file2,dir1/file3

### Deployment ###

keep.old.version=1