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# This is -*-Perl-*- code
## Bioperl Test Harness Script for Modules
##
# $Id: Biblio_biofetch.t,v 1.3.2.3 2002/03/17 00:48:49 jason Exp $
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
use vars qw($NUMTESTS $DEBUG);
$DEBUG=0;
my $error;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
$error = 0;
if( $@ ) {
use lib 't';
}
use Test;
$NUMTESTS = 13;
plan tests => $NUMTESTS;
eval { require 'IO/String.pm' };
if( $@ ) {
print STDERR "IO::String not installed. This means the Bio::DB::* modules are not usable. Skipping tests.\n";
for( 1..$NUMTESTS ) {
skip(1,"IO::String not installed. This means the Bio::DB::* modules are not usable. Skipping tests");
}
$error = 1;
}
}
if( $error == 1 ) {
exit(0);
}
use Bio::Biblio;
ok 1;
use Bio::Biblio::IO;
ok 1;
## End of black magic.
##
## Insert additional test code below but remember to change
## the print "1..x\n" in the BEGIN block to reflect the
## total number of tests that will be run.
my ($db,$ref,$refio);
# get a single ref
my $verbose = 0;
$ref = $refio = undef;
# check BioFetch access method
eval {
ok ($db = new Bio::Biblio (-access => 'biofetch',
-verbose=>$verbose));
ok(defined($ref = $db->get_by_id('20063307')));
ok $ref->identifier, '20063307';
};
if ($@) {
print STDERR "Warning: Couldn't connect to BioFetch server with Bio::DB::Medline.pm!\n";
print STDERR $@ if( $DEBUG );
foreach ( $Test::ntest..$NUMTESTS) {
skip(1,'could not connect to Medline');}
}
$ref = $refio = undef;
eval {
ok defined($db = new Bio::Biblio(-access => 'biofetch',
-verbose=>$verbose,
-retrievaltype => 'tempfile'
));
my $ids = ['20063307', '98276153'];
ok(defined($refio = $db->get_all($ids)));
ok($refio->next_bibref->identifier, '20063307');
ok($refio->next_bibref->identifier, '98276153');
};
if ($@) {
if( $DEBUG ) {
warn "Batch access test failed.Error: $@\n";
}
foreach ( $Test::ntest..$NUMTESTS ) { skip('no network access',1); }
}
eval {
ok defined($db = new Bio::Biblio(-access => 'biofetch',
-verbose=>$verbose
));
ok(defined($refio = $db->get_Stream_by_batch(['20063307', '98276153'])));
ok($refio->next_bibref->identifier, '20063307');
ok($refio->next_bibref->identifier, '98276153');
};
if ($@) {
if( $DEBUG ) {
warn "Batch access test failed.Error: $@\n";
}
foreach ( $Test::ntest..$NUMTESTS ) { skip('no network access',1); }
}
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