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#-*-Perl-*-
## Bioperl Test Harness Script for Modules
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
plan test => 15;
}
use Bio::Seq;
use Bio::Tools::GFF;
use Bio::SeqFeatureI;
use Bio::SeqFeature::Generic;
my $feat = new Bio::SeqFeature::Generic( -start => 10, -end => 100,
-strand => -1, -primary => 'repeat',
-source => 'repeatmasker',
-score => 1000,
-tag => {
new => 1,
author => 'someone',
sillytag => 'this is silly!' } );
ok($feat);
my $gff1out = Bio::Tools::GFF->new(-gff_version => 1, -file => ">out1.gff");
ok($gff1out);
my $gff2out = Bio::Tools::GFF->new(-gff_version => 2, -file => ">out2.gff");
ok($gff2out);
$gff1out->write_feature($feat);
$gff2out->write_feature($feat);
$gff1out->close();
$gff2out->close();
my $gff1in = Bio::Tools::GFF->new(-gff_version => 1, -file => "out1.gff");
ok($gff1in);
my $gff2in = Bio::Tools::GFF->new(-gff_version => 2, -file => "out2.gff");
ok($gff2in);
my $feat1 = $gff1in->next_feature();
ok($feat1);
ok($feat1->start, $feat->start);
ok($feat1->end, $feat->end);
ok($feat1->primary_tag, $feat->primary_tag);
ok($feat1->score, $feat->score);
my $feat2 = $gff2in->next_feature();
ok($feat2);
ok($feat2->start, $feat->start);
ok($feat2->end, $feat->end);
ok($feat2->primary_tag, $feat->primary_tag);
ok($feat2->score, $feat->score);
END {
unlink("out1.gff", "out2.gff");
}
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