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#-*-Perl-*-
## Bioperl Test Harness Script for Modules
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
plan test => 1;
}
use Bio::Tools::SeqAnal;
use Bio::Tools::IUPAC;
use Bio::Seq;
# test IUPAC
my $ambiseq = new Bio::Seq (-seq => 'ARTCGTTGR', -type =>
'Dna');
my $stream = new Bio::Tools::IUPAC('-seq' => $ambiseq);
my $b = 1;
while (my $uniqueseq = $stream->next_seq()) {
if( ! $uniqueseq->isa('Bio::Seq') ) {
$b =0;
last; # no point continuing if we get here
}
}
ok $b;
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