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# -*-Perl-*-
## Bioperl Test Harness Script for various modules
## $Id: Sigcleave.t,v 1.9 2001/01/25 22:13:40 jason Exp $
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
plan tests => 3;
}
use Bio::Tools::Sigcleave;
my $protein = 'MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGDAGEGEN';
# Build object
my $sigcleave_object = new Bio::Tools::Sigcleave(-id =>'test_sigcleave_seq',
-type =>'amino',
-threshold => 0,
-seq =>$protein);
ok ($sigcleave_object);
# Test raw result accessor
my %results = $sigcleave_object->signals;
ok $results{57}, 0.3, "unable to get raw sigcleave results";
# Test formatted output method
my $formatted_output = $sigcleave_object->pretty_print;
ok ($formatted_output);
##
## More tests
##
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