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# -*-Perl-*-
## Bioperl Test Harness Script for Modules
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
use vars qw($NUMTESTS $DEBUG);
$NUMTESTS = 23;
$DEBUG = 0;
plan test => $NUMTESTS;
}
use Bio::Tools::EPCR;
use Bio::SeqIO;
use Bio::Root::IO;
my $seqio = new Bio::SeqIO('-format' => 'fasta', '-file' => Bio::Root::IO->catfile("t","data","genomic-seq.fasta"));
my $seq = $seqio->next_seq;
ok($seq);
my $epcr = new Bio::Tools::EPCR( '-file' => Bio::Root::IO->catfile("t","data","genomic-seq.epcr"));
ok ($epcr);
while( defined(my $feature = $epcr->next_feature) ) {
ok($feature);
ok($feature->start);
ok($feature->end);
$seq->add_SeqFeature($feature);
}
if( $DEBUG ) {
$seqio = new Bio::SeqIO('-format' => 'genbank' );
$seqio->write_seq($seq);
}
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