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# This is -*-Perl-*- code
## Bioperl Test Harness Script for Modules
##
# $Id: MeSH.t,v 1.3 2003/08/29 17:03:50 birney Exp $
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
use vars qw($NUMTESTS $DEBUG);
$DEBUG = $ENV{'BIOPERLDEBUG'} || 0;
my $error;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
$error = 0;
if( $@ ) {
use lib 't';
}
use Test;
$NUMTESTS = 26;
plan tests => $NUMTESTS;
eval { require IO::String;
require LWP::UserAgent;
require HTTP::Request::Common;
};
if( $@ ) {
print STDERR "IO::String or LWP::UserAgent or HTTP::Request not installed. This means the MeSH modules are not usable. Skipping tests.\n";
for( 1..$NUMTESTS ) {
skip("IO::String, LWP::UserAgent,or HTTP::Request not installed",1);
}
$error = 1;
}
}
if( $error == 1 ) {
exit(0);
}
END {
foreach ( $Test::ntest..$NUMTESTS) {
skip('unable to run all of the tests depending on web access',1);
}
}
use Data::Dumper;
require Bio::Phenotype::MeSH::Term;
require Bio::Phenotype::MeSH::Twig;
require Bio::DB::MeSH;
ok 1;
my $verbose = 0;
ok my $term = Bio::Phenotype::MeSH::Term->new(-verbose =>$verbose);
ok $term->id('D000001'), 'D000001';
ok $term->id, 'D000001';
ok $term->name('Dietary Fats'), 'Dietary Fats';
ok $term->name, 'Dietary Fats';
ok $term->description('dietary fats are...'), 'dietary fats are...';
ok $term->description, 'dietary fats are...';
ok my $twig = Bio::Phenotype::MeSH::Twig->new(-verbose =>$verbose);
ok $twig->parent('Fats'), 'Fats';
ok $twig->parent(), 'Fats';
ok $term->add_twig($twig);
ok $term->each_twig(), 1;
ok $twig->term, $term;
ok $twig->add_sister('Bread', 'Candy', 'Cereals'), 3;
ok $twig->add_sister('Condiments', 'Dairy Products'), 2;
ok $twig->each_sister(), 5;
ok $twig->purge_sisters();
ok $twig->each_sister(), 0;
ok $twig->add_child('Butter', 'Margarine'), 2;
ok $twig->each_child(), 2;
ok $twig->purge_children();
ok $twig->each_child(), 0;
eval {
ok my $mesh = new Bio::DB::MeSH(-verbose => $verbose);
ok my $t=$mesh->get_exact_term('Dietary Fats');
ok $t->each_twig(), 2;
#print Dumper $t;
};
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