1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
|
# -*-Perl-*-
## Bioperl Test Harness Script for Modules
## $Id: RelationshipType.t,v 1.3 2003/05/27 22:13:41 lapp Exp $
# Before `make install' is performed this script should be runnable with
# `make test'. After `make install' it should work as `perl test.t'
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
plan tests => 21;
}
use Bio::Ontology::RelationshipType;
use Bio::Ontology::Ontology;
my $ont = Bio::Ontology::Ontology->new(-name => "relationship type");
my $IS_A = Bio::Ontology::RelationshipType->get_instance("IS_A", $ont);
my $PART_OF = Bio::Ontology::RelationshipType->get_instance("PART_OF", $ont);
my $CONTAINS = Bio::Ontology::RelationshipType->get_instance("CONTAINS", $ont);
my $FOUND_IN = Bio::Ontology::RelationshipType->get_instance("FOUND_IN", $ont);
my $IS_A2 = Bio::Ontology::RelationshipType->get_instance("IS_A", $ont);
ok( $IS_A->isa( "Bio::Ontology::RelationshipType" ) );
ok( $IS_A->isa( "Bio::Ontology::TermI" ) );
ok( ! $IS_A->equals( $PART_OF ) );
ok( $IS_A->equals( $IS_A2 ) );
ok( $PART_OF->equals( $PART_OF ) );
ok( $IS_A->identifier(), undef ); # don't make up identifiers
ok( $IS_A->name(), "IS_A" );
ok( $IS_A->definition(), "IS_A relationship predicate (type)" );
ok( $IS_A->ontology()->name(), "relationship type" );
ok( $PART_OF->identifier(), undef ); # don't make up identifiers
ok( $PART_OF->name(), "PART_OF" );
ok( $PART_OF->definition(), "PART_OF relationship predicate (type)" );
ok( $PART_OF->ontology()->name(), "relationship type" );
ok( $CONTAINS->identifier(), undef ); # don't make up identifiers
ok( $CONTAINS->name(), "CONTAINS" );
ok( $CONTAINS->definition(), "CONTAINS relationship predicate (type)" );
ok( $CONTAINS->ontology()->name(), "relationship type" );
ok( $FOUND_IN->identifier(), undef ); # don't make up identifiers
ok( $FOUND_IN->name(), "FOUND_IN" );
ok( $FOUND_IN->definition(), "FOUND_IN relationship predicate (type)" );
ok( $FOUND_IN->ontology()->name(), "relationship type" );
|
