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# -*-Perl-*-
## Bioperl Test Harness Script for Modules
## $Id: SNP.t,v 1.1 2003/05/14 12:04:06 heikki Exp $
use strict;
BEGIN {
# to handle systems with no installed Test module
# we include the t dir (where a copy of Test.pm is located)
# as a fallback
eval { require Test; };
if( $@ ) {
use lib 't';
}
use Test;
plan tests => 13 }
use Bio::Variation::SNP;
ok(1);
my($a);
#
# SNP
#
ok $a = new Bio::Variation::SNP;
ok $a->id('123'), 123;
eval { $a->di('123'); };
ok 1 if $@;
ok $a->validated('by-cluster'), 'by-cluster';
my @alleles = ('A', 'T');
ok $a->validated(\@alleles), \@alleles;
ok $a->desc('abc'), 'abc'; # Bio::Variation::Allele method
ok $a->chromosome('X'), 'X'; # Bio::Variation::Allele method
ok my $s = $a->add_subsnp;
ok $s->is_subsnp;
ok $s->handle('HGBASE'), 'HGBASE';
ok $a->add_subsnp;
ok $a->each_subsnp, 2;
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