1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
|
# -*-Perl-*- Test Harness script for Bioperl
# $Id: InstanceSite.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 6);
use_ok('Bio::Matrix::PSM::InstanceSite');
}
my %params=(-seq=>'TATAAT',-id=>"TATAbox1", -accession_number=>'ENSG00000122304', -mid=>'TB1',
-desc=>'TATA box, experimentally verified in PRM1 gene',-relpos=>-35, -start=>1965);
ok my $instance = Bio::Matrix::PSM::InstanceSite->new(%params);
is $instance->seq, 'TATAAT';
is $instance->subseq(1,3),'TAT';
is $instance->accession_number, 'ENSG00000122304';
is $instance->end(1970), 1970;
|
