1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
# -*-Perl-*- Test Harness script for Bioperl
# $Id: SeqVersion.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 10,
-requires_module => 'LWP::UserAgent');
use_ok('Bio::DB::SeqVersion');
}
ok my $query = Bio::DB::SeqVersion->new(-type => 'gi');
SKIP: {
test_skip(-tests => 8, -requires_networking => 1);
eval { $query->get_history('DODGY_ID_WHICH_SHOULD_FAIL') };
like($@, qr/could not parse/i, 'throw on bad ID');
my $latest_gi = $query->get_recent(2);
is($latest_gi, 2, 'get_recent');
my @all_gis = $query->get_all(2);
is(scalar @all_gis, 8, 'get_all');
$latest_gi = $query->get_recent('A00002');
is($latest_gi, 2, 'get_recent, string');
$latest_gi = $query->get_recent(27478738);
is($latest_gi, 42659163, 'get_recent, integer');
# check that default type is "gi"
ok $query = Bio::DB::SeqVersion->new();
ok my $ref = $query->get_history(3245);
is($ref->[0]->[0], 578167, 'get_history');
}
|
