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# -*-Perl-*- Test Harness script for Bioperl
# $Id: bsml_sax.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 15,
-requires_modules => [qw(XML::SAX
XML::SAX::Writer
XML::SAX::Base)]);
use_ok('Bio::SeqIO');
}
my $verbose = test_debug();
my $str = Bio::SeqIO->new(-format => 'bsml_sax',
-verbose => $verbose,
-file => test_input_file('U83300.bsml'));
my $seq = $str->next_seq;
isa_ok($seq, 'Bio::Seq::RichSeqI');
my @refs = $seq->annotation->get_Annotations('reference');
is(@refs, 2);
is($seq->display_id,'MIVN83300');
is($seq->molecule ,'dna');
ok(! $seq->is_circular);
is($seq->get_dates,2);
is($seq->accession_number, 'U83300');
is($seq->seq_version,1);
my @feats = $seq->get_SeqFeatures;
is(@feats, 2);
is($feats[1]->start, 1);
is($feats[1]->end, 946);
is($feats[1]->get_tag_values('db_xref'), 3);
is($seq->annotation->get_Annotations('reference'),2);
is($seq->annotation->get_Annotations('dblink'),2);
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