File: metafasta.t

package info (click to toggle)
bioperl 1.6.1-2
  • links: PTS, VCS
  • area: main
  • in suites: squeeze
  • size: 40,768 kB
  • ctags: 12,005
  • sloc: perl: 174,299; xml: 13,923; sh: 1,941; lisp: 1,803; asm: 109; makefile: 53
file content (25 lines) | stat: -rw-r--r-- 558 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
# -*-Perl-*- Test Harness script for Bioperl
# $Id: metafasta.t 15112 2008-12-08 18:12:38Z sendu $

use strict;

BEGIN {
	use lib '.';
    use Bio::Root::Test;
    
    test_begin(-tests => 6);
	
	use_ok('Bio::SeqIO::metafasta');
}

my $verbose = test_debug();

my $io = Bio::SeqIO->new(-format => 'metafasta',
								 -verbose => $verbose,
								 -file => test_input_file('test.metafasta'));

isa_ok($io, 'Bio::SeqIO');
ok(my $seq = $io->next_seq);
isa_ok($seq, 'Bio::Seq::Meta');
is($seq->seq, "ABCDEFHIJKLMNOPQRSTUVWXYZ");
is($seq->display_id,'test');