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# -*-Perl-*- Test Harness script for Bioperl
# $Id: tigr.t 15283 2009-01-02 22:16:55Z cjfields $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 8,
-requires_module => 'Error',
-requires_networking => 0,
);
use_ok('Bio::SeqIO::tigr');
}
my $verbose = test_debug();
TODO: {
my $format = 'tigr';
todo_skip "No tests for $format format -- no sample file to test against", 7, if 1;
my $seqio_obj = Bio::SeqIO->new(-file => test_input_file("test.$format"),
-format => $format);
isa_ok($seqio_obj, 'Bio::SeqIO');
my @methods = qw(next_seq write_seq);
foreach my $method (@methods) {
can_ok($seqio_obj, $method) ||
diag "$method method not implemented for $format";
}
# checking the first sequence object
my $seq_obj = $seqio_obj->next_seq();
isa_ok($seq_obj, 'Bio::Seq');
my %expected = ('seq' => '' .
'length' => '',
'primary_id' => '',
'description' => qr(),
);
is ($seq_obj->seq(), $expected{'seq'}, 'sequence');
is ($seq_obj->length(), $expected{'length'}, 'length');
is ($seq_obj->primary_id(), $expected{'primary_id'}, 'primary_id');
like ($seq_obj->description(), $expected{'description'}, 'description');
}
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