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# -*-Perl-*- Test Harness script for Bioperl
# $Id: OddCodes.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 11);
use_ok('Bio::PrimarySeq');
use_ok('Bio::Tools::OddCodes');
}
my ($seqobj, $oddcode_obj);
$seqobj = Bio::PrimarySeq->new('-seq'=>'ABCDEFGHIJKLMNOPQRSTUVWXYZ',
'-alphabet'=>'protein',
'-id'=>'test');
$oddcode_obj = Bio::Tools::OddCodes->new('-seq' => $seqobj);
isa_ok $oddcode_obj, 'Bio::Tools::OddCodes';
is ${$oddcode_obj->structural()}, 'ABAEEIAEIJEIIEOAEEAAUIAXAZ';
is ${$oddcode_obj->chemical()}, 'LBSAARLCLJCLSMOIMCHHULRXRZ';
is ${$oddcode_obj->functional()}, 'HBPAAHPCHJCHHPOHPCPPUHHXPZ';
is ${$oddcode_obj->charge()}, 'NBNAANNCNJCNNNONNCNNUNNXNZ';
is ${$oddcode_obj->hydrophobic()}, 'IBOOOIOOIJOIIOOIOOOOUIIXOZ';
is ${$oddcode_obj->Dayhoff()}, 'CBADDGCEFJEFFDOCDECCUFGXGZ';
is ${$oddcode_obj->Sneath()}, 'CBEFFHCHAJGADDOCDGEEUAHXHZ';
is ${$oddcode_obj->Stanfel()}, 'ABACCDAEAJEAACOACEAAUADXDZ';
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