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# -*-Perl-*- Test Harness script for Bioperl
# $Id: ELM.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 15,
-requires_modules => [qw(IO::String
LWP::UserAgent
HTML::HeadParser)],
-requires_networking => 1);
use_ok('Bio::Tools::Analysis::Protein::ELM');
use_ok('Bio::SeqIO');
use_ok('Bio::WebAgent');
}
my $verbose = test_debug();
ok my $tool = Bio::WebAgent->new(-verbose =>$verbose);
my $seqio=Bio::SeqIO->new( -verbose => $verbose,
-format => 'swiss',
-file => test_input_file('swiss.dat'));
my $seq = $seqio->next_seq();
ok $tool = Bio::Tools::Analysis::Protein::ELM->new(
-seq=>$seq->primary_seq);
ok $tool->compartment(['golgi', 'er']);
ok my $cmp = $tool->compartment();
is $cmp->[1], 'GO:0005783';
ok $tool->species(9606);
is $tool->species, 9606;
ok $tool->run ();
exit if $tool->status eq 'TERMINATED_BY_ERROR';
ok my $raw = $tool->result('');
print $raw if $verbose;
ok my $parsed = $tool->result('parsed');
is $parsed->{'CLV_NDR_NDR_1'}{'locus'}[0], '54-56';
ok my @res = $tool->result('Bio::SeqFeatureI');
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