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# -*-Perl-*- Test Harness script for Bioperl
# $Id: GOR4.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 13,
-requires_modules => [qw(IO::String LWP::UserAgent)],
-requires_networking => 1);
use_ok("Bio::Seq");
use_ok("Bio::Tools::Analysis::Protein::GOR4");
}
my $seq = Bio::Seq->new(-seq => 'MSADQRWRQDSQDSFGDSFDGDPPPPPPPPFGDSFGDGFSDRSRQDQRS',
-display_id => 'test2');
ok my $tool = Bio::Tools::Analysis::Protein::GOR4->new(-seq=>$seq->primary_seq);
SKIP: {
ok $tool->run();
skip "Skipping tests since we got terminated by a server error", 9 if $tool->status eq 'TERMINATED_BY_ERROR';
ok my $raw = $tool->result('');
ok my $parsed = $tool->result('parsed');
is $parsed->[0]{'coil'}, '999';
my @res = sort {$a->start <=> $b->start} $tool->result('Bio::SeqFeatureI');
if (scalar @res > 0) {
ok 1;
}
else {
skip 'No results - could not connect to GOR4 server?', 6;
}
is $res[0]->start, 1;
is $res[0]->end, 43;
ok my $meta = $tool->result('meta');
test_skip(-tests => 2, -requires_module => 'Bio::Seq::Meta::Array');
is $meta->named_submeta_text('GOR4_coil',1,2), '999 999';
is $meta->seq, 'MSADQRWRQDSQDSFGDSFDGDPPPPPPPPFGDSFGDGFSDRSRQDQRS';
}
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