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# -*-Perl-*- Test Harness script for Bioperl
# $Id: Signalp.t 15112 2008-12-08 18:12:38Z sendu $
use strict;
BEGIN {
use lib '.';
use Bio::Root::Test;
test_begin(-tests => 11);
use_ok('Bio::Tools::Signalp');
}
# global setting
my $verbose = test_debug();
# shared variables
my $infile;
my $parser;
my @feat;
# negative example without "YES" features
ok $infile = test_input_file('signalp.negative.out');
ok $parser = Bio::Tools::Signalp->new(-file=>$infile, -verbose=>$verbose);
while ( my $feat = $parser->next_result ) {
push @feat, $feat;
}
is @feat, 0;
is $parser->_seqname, 'my_fasta_id';
is $parser->_fact1, 'NO';
# positive example with "YES" features
ok $infile = test_input_file('signalp.positive.out');
ok $parser = Bio::Tools::Signalp->new(-file=>$infile, -verbose=>$verbose);
#
# The current module does NOT parse stuff properly
# It is probably from version 2 but version 3 is used today
# This has to be investigated!!!! --Torsten
# FIXME / TODO? / BUG / ***
#
while ( my $feat = $parser->next_result ) {
push @feat, $feat;
}
is @feat , 1;
is $parser->_seqname, 'my_fasta_id';
is $parser->_fact1, 'YES';
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